Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq5267 486 2e-132 seq5395 150 2e-31 seq5238 140 3e-28 seq5170 131 2e-25 seq5396 127 2e-24 seq5402 125 7e-24 >seq5267 Length=4296760 Score = 486 bits (538), Expect = 2e-132 Identities = 607/825 (74%), Gaps = 8/825 (1%) Strand=Plus/Plus Query 132607 TGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTC 132666 || || ||||||||||| ||||| || || || || || || |||| || || | | | Sbjct 668458 TGGTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 668517 Query 132667 ATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTTGGTGCCGATCAGGTCGACGAGCAGC 132726 || || | |||||||| || |||||| |||| || ||| || || ||||| Sbjct 668518 ATGAAGTTGAAGGGGTTCTTGGTATTGTAGATCTTGCCAACGCCCAGCTCCACCAGCAGA 668577 Query 132727 CTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGTCCCAGCAGACGC 132786 | || |||||||| |||||||| ||||||||| |||||||| | || | || Sbjct 668578 CGATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATGCCGATGAGGTTT 668637 Query 132787 ACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCC 132846 || |||| || |||||||| || ||||| ||||| || || ||| || ||| || Sbjct 668638 ACGGGCAAGGCATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATCGCGGATGATCTCG 668697 Query 132847 CTAACGCGCGC-CGCGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCA-AGCAAAGT 132904 | | |||| | ||| || || || |||||||| |||| ||||||| |||| ||||||| Sbjct 668698 ATGATGCGCTCGCGC-CTGGGTCGCTGCACCAAGTGCTGGAACATC-AGCACGGCAAAGT 668755 Query 132905 CGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGA 132964 |||| |||| ||||||||| | ||| ||||| |||||| ||| |||| || ||||| | Sbjct 668756 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGTCCCGGCATCA 668815 Query 132965 GGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGA 133024 | ||||| || || ||||| || |||| |||||| ||||| ||||||| |||||||| Sbjct 668816 GACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCGA 668875 Query 133025 CGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCA 133084 |||| || || || | | |||||| ||||| |||| | ||| || ||||||| | Sbjct 668876 CGGCGGCAAAGGCAATGATGCGCTCCCCGAAGTTGGCCGCCTTGGAGGAGATCCAGGAAA 668935 Query 133085 GCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGA 133144 | ||||| || ||||| || || ||||| || ||||||||||| ||| | | | Sbjct 668936 GGGCCCAGTCCGCCTTGCGCTTCACAGCGGGCATTGTCTCGATGGCGTTGAAC--AGGTA 668993 Query 133145 GTTTCTCTTCCGAGGA--ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTG 133202 | | || | ||| || | |||||||||||| || ||||| |||||||| Sbjct 668994 TTCGCGCTGGTGCGGATCCCGGATGTAGGTGTCGATCAGCACACTGTACATCTCCGAGTG 669053 Query 133203 TACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTC 133262 ||||||||||||||||| || ||||| || ||||| || ||||| | |||||| || Sbjct 669054 CACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGAGCCTCCGTGATCTGCACCTC 669113 Query 133263 TTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGC 133322 || ||| ||||||||||| || ||||| |||||||| ||| ||||||||| ||||| Sbjct 669114 CTGGCTGAAGCGCTCGACCAGGTTCTCGTTAACGATGCCATCGGAGGCGGCGAAGAAGGC 669173 Query 133323 CAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTC 133382 |||||||||| |||||| |||||||||| ||| |||| ||| | ||||||| | ||| Sbjct 669174 CAGCACGTGCGAGATGAAGTGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCGGTCAGGTC 669233 Query 133383 CTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGC 133427 |||||| || ||||||||||| |||||||| || || ||||| || Sbjct 669234 CTTGGAGAGATCCACCTCCTCCACGGTCCAGAAAGAGGCCTCAGC 669278 >seq5395 Length=2659632 Score = 150 bits (166), Expect = 2e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| || || || || ||||| ||||||||| | || |||||| || Sbjct 975988 AACATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 975929 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | |||| | || |||| ||||| |||||||| ||| | ||| Sbjct 975928 TCCGACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAC 975869 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || |||||||| |||| |||||||| ||| ||| Sbjct 975868 CAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTAC 975809 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || || |||||||| || Sbjct 975808 AACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCG 975771 Score = 149 bits (164), Expect = 6e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || ||||| ||||||||| | || |||||| || || Sbjct 975757 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 975698 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| |||||||| ||| | ||||| Sbjct 975697 GATACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 975639 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| || || |||||||| |||| |||||||| ||||||||| Sbjct 975638 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAA 975579 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| | || || || |||||||| ||| || | || ||| Sbjct 975578 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGC 975530 >seq5238 Length=3592495 Score = 140 bits (154), Expect = 3e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| ||||| ||||||||| | || || ||| | | Sbjct 2679234 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 2679293 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || ||| | || || Sbjct 2679294 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 2679353 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| |||||||| |||| |||||||| |||||||||| Sbjct 2679354 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCCGACTACAAC 2679413 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| |||| || || ||||||| || Sbjct 2679414 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCG 2679448 >seq5170 Length=6624210 Score = 131 bits (144), Expect = 2e-25 Identities = 236/339 (70%), Gaps = 11/339 (3%) Strand=Plus/Minus Query 107472 ATTCCGATAATGCCGCACGCGAGCCGGCCGCCCGAGTTGCCGGTGGTCTTGCTCAACGGA 107531 || ||||| | |||||| | | ||| | || | ||| || |||| |||||||| | Sbjct 512638 ATGCCGATGACGCCGCAGCCAATGCGGGCACCTGCGTTTCCCGTGGACTTGCTCAGCTCG 512579 Query 107532 TGGTCGGTGAGGCCCAGATCGTCCCTGTCCGTGTGCACGACCAGACTCCGTCCGATGATG 107591 ||| | |||| ||||| || || | ||| || || | | || ||||||||| Sbjct 512578 TGGCCACCCTGGCCGAGATCATCGGCATCGGCGTGGACCACAACGGTGCGCCCGATGATG 512519 Query 107592 CTGTGCGGGCCGTACAAAGTCA-CGACGCCGTCCGTCAAGCTCACCTCGGTGAGCGCGTC 107650 |||| | |||| ||| || | | || ||| || | | | |||| |||| | ||| Sbjct 512518 CTGTCGGCGCCGAACAGCGTGATCTTCGA-GTCGGTGATGTTGACCTTGGTGGGACAGTC 512460 Query 107651 GCGGCCCGCCGACTTGAGGTTGCCCAGGTCGCCGACGTGCCTGATCTCGGCGTCGGGCGC 107710 || | ||| | || |||||||||||| || | ||| | | ||||| || |||| || Sbjct 512459 GCCGGTGGCC---TCGATGTTGCCCAGGTCTCCCAGGTGACGGTTCTCGTCGGCGGGAGC 512403 Query 107711 GCCGTGGTCGCGCTT--CGTCGGG-TTGAAATGCTCGCCGGCCGACGTGCAGCCGTTGCT 107767 ||||| || ||| ||| ||| ||||| ||| |||| |||| ||||||||||| | Sbjct 512402 TCCGTGCTC---CTTGCCGTAGGGATTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGT 512346 Query 107768 CGCGTCGCCGAACTCGTGCACGTGGAAGCCGTGCAGGCC 107806 ||| ||||||||||| |||||||| ||||||||||| Sbjct 512345 GTTGTCCCCGAACTCGTGTACGTGGAATCCGTGCAGGCC 512307 >seq5396 Length=9561034 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || ||||||||||| |||||||| | || ||||| | Sbjct 8330848 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACGCTTGAGGTCGAACCT 8330907 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | ||| | |||| || || | |||||||| |||||||| | || Sbjct 8330908 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 8330967 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| ||||| |||||||| || | ||||||||| ||||| Sbjct 8330968 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 8331027 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||| || ||||| | || |||| |||||||||||| || | || || Sbjct 8331028 AACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 8331077 >seq5402 Length=10656099 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || ||||| ||||||||| | || || ||| | | Sbjct 571637 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCATCT 571578 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| |||||||||||| | || || Sbjct 571577 GACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCA 571519 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| || || ||||| Sbjct 571518 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTTTCTGATTACAA 571459 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| |||||||||| || ||| || |||| || Sbjct 571458 CATCCAGAAGGAGTCGACCTTGCATTTGGTTCTCCGTCTGCGAGGTGG 571411 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||||||| || || || || || | || || || ||||| ||| | || || ||| || Sbjct 571868 AAAATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATTACCTTGGAGGTGGAGCCC 571809 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | || || | | || | || |||| ||||| ||||| || ||| | || Sbjct 571808 TCCGACACGATTGAGAATG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGA 571750 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| || || | ||| ||||| || ||||| |||| || ||||| |||||| Sbjct 571749 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTGTCCGACTA 571690 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| |||| || || ||||| || ||| || | || || Sbjct 571689 CAACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGCGGTGG 571639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500138269320320