Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5396 179 5e-40 seq5267 96.9 4e-15 seq4488 95.1 2e-14 >seq5396 Length=9561034 Score = 179 bits (198), Expect = 5e-40 Identities = 872/1370 (64%), Gaps = 29/1370 (2%) Strand=Plus/Minus Query 112008 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 112067 || || ||||| |||||| |||| || | |||||||| || | ||| || Sbjct 8235122 TACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTGGAACTTAAGAAGAACACCGGC 8235063 Query 112068 GATGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 112127 | |||||| || ||||||||| |||| ||| || ||||| || |||||||| ||| Sbjct 8235062 AAGGAGGAGAATCGCGCCCGCGATCTGTTCTACGCCCTGTGGATACCCGATCTCTTTATG 8235003 Query 112128 AAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTC 112187 ||| | || |||| | ||| ||||||| || | ||||| | || || || || Sbjct 8235002 AAGCGCGTCGAGGCCAATGGAGATTGGTCACTAATGTGTCCGCATAAATGCCCTGGCCTT 8234943 Query 112188 TCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGG 112247 ||||| ||| || || || ||| | || ||||| ||| |||| |||| Sbjct 8234942 CACGATGTGTGGGGCGATGAATTCGAAAAGTTGTATGAGAAGTATGAGCAAGAGGGTCGT 8234883 Query 112248 GCGACTGCGACGGTGCCAGCTGCCGATG--TGTGGAAAGCTATTCTCAAGTCTCAAACCG 112305 || | ||||| ||| | || ||||| || ||| | || | || || Sbjct 8234882 GCCAACCGAACGGTTAAGGCT--CAATCCTTGTGGTTCGCCATTATTGAGGCACAGGTCG 8234825 Query 112306 AGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 112365 | ||||| | || || ||||| | || || ||||| ||| ||||| || || ||| Sbjct 8234824 AAACTGGAAACCCCTACATGCTGTTTAAGGATGCCTGCAACAGGAAGAGCAACCAGCAGA 8234765 Query 112366 ATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 112425 || | || |||||| | |||| | || ||||||||| |||| | | | Sbjct 8234764 ATGTCGGCACCATCAAGTGCAGCAACTTGTGCACAGAAATCGTGGAGTACTCCTCTCCGG 8234705 Query 112426 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 112485 | |||| || || || ||| | ||||| ||||| ||| || || || ||| |||| Sbjct 8234704 ACGAGATTGCAGTCTGCAACTTGGCATCCATCGCCCTCAACATGTTCGTCACTCCCGAGA 8234645 Query 112486 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 |||||| |||| | ||||| | |||||||| || || || || || || || | Sbjct 8234644 ---AGACATACGATTTCAAGAAACTTAAGGAAGTTACCAAGACGGTTACCAAGAATCTTA 8234588 Query 112546 ACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGA 112604 ||| | || |||| ||| || |||||| | ||| || ||||| || |||| Sbjct 8234587 ACAAGATCATCGATATAAACTTCTACCCCCTGCCAGAG-GCAAAGAAATCCAACTTGAGG 8234529 Query 112605 CACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 112664 || ||||| | || |||||||||| || |||| || | | |||||| || | Sbjct 8234528 CATCGTCCCGTGGGCATCGGTGTCCAGGGATTCGCTGACGCCCTAATTCTTATGCGTTTC 8234469 Query 112665 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCAC 112724 | | ||| || ||||| | ||| || ||||| || || || || || Sbjct 8234468 CCCTATGAAAGTGAAGAAGCCGGTCTCTTGAATCAGCAGATATTCGAAACCATCTACTAC 8234409 Query 112725 GCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 112784 | ||| || || || |||| || |||| || | || || ||||||||||||| |||| Sbjct 8234408 GGCGCCCTGGAAGCCAGTTGTGAACTGGCCCAGATCGACGGCCCATATGAAACCTATGAG 8234349 Query 112785 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG--AAGGTG-AGACCAAG 112841 || ||| | |||| | || || | || ||||||| || ||| ||| || Sbjct 8234348 GGAAGTCCCGTGAGCAAAGGCATTCTGCAGTACGACATGTGGGACAAAGTGCCGACAAAC 8234289 Query 112842 CTTCACTACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 112901 ||| | |||||| | || ||||| ||||||| || | ||| | || ||| Sbjct 8234288 CTT---TGGGACTGGCAGAAACTGAAGGAGTCCATCAAGCAGCACGGTGTCCGGAACTCC 8234232 Query 112902 CTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 112961 || ||| | || || ||||| || || ||||| || ||||| |||| || || |||| Sbjct 8234231 CTGTTGGTTGCGCCTATGCCCACTGCGTCCACTGCCCAAATTATGGGCAACAACGAATCT 8234172 Query 112962 TTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATT 113021 || || || ||||| ||||| || ||| || || || | || || || | Sbjct 8234171 TTCGAGCCGTACACAACGAATATTTATACCAGGCGAGTTCTGTCTGGCGAATTCCAAGTG 8234112 Query 113022 GTCAACAAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 || ||| | ||| | | ||||| | ||| | | | ||| | | || |||||| Sbjct 8234111 GTTAACCATCATTTGTTAAGGGACCTAACGGAGCTGGACTTGTGGGACGACGACATGAAG 8234052 Query 113082 GATC---TCATGGTGAAAGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAA 113138 | | |||| | ||| || || || || || ||||||| || || || | ||| Sbjct 8234051 AACCAAATCAT--TTCCAGCAGG-GGCTCAATCCAGAATATTGAGGCCATCCCCCA-GAA 8233996 Query 113139 ATTAAG-AAGTTGTACCGCACAGTTTGGGAAATCAAGATGAAGGATGTCATTGACATGGC 113197 | | | ||||| ||||| ||||||||| ||||| |||| | ||||| Sbjct 8233995 GGTCCGCGATCTGTACAAAACAGTGTGGGAAATCTCAGTGAAGTCGACCATTAAGATGGC 8233936 Query 113198 CGCAGATCGTGGTCGCTTCATTGATCAAAGTCAAAGTATGAATCTATTCAT---GGAAAG 113254 ||||||||| || ||||| ||||| ||||| | || |||||| | | || Sbjct 8233935 CGCAGATCGAGGAGCGTTCATAGATCAGAGTCAGTCGTTCAA--CATTCATGTGGCAGAG 8233878 Query 113255 TCCAACGATGTCCAAGCTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAAC 113314 | ||| ||| || ||| | || || ||| | || ||||| ||||||||||| Sbjct 8233877 CCAAACTATG-GAAAACTCACGTCCATACACTTCTATTCCTGGAAAGCTGGTCTCAAAAC 8233819 Query 113315 GGGGATGTATTACCTCCGATCTAAGGCAAAGGCGCGCCCAATTCAGTTCA 113364 || ||||| ||||| || | ||| || || | | |||||||||| Sbjct 8233818 TGGAATGTACTACCTGCGCACAAAGCCAGCTGCAAACGCCATTCAGTTCA 8233769 >seq5267 Length=4296760 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 ||||| || | || ||||| || ||||| ||||||||| || |||| | | Sbjct 668900 GAGCGCATCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCC 668841 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 102299 |||| ||||| |||||||| ||||| ||||| || || ||||||||||||||| ||| Sbjct 668840 ATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACGAGCTCATC 668781 Query 102300 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 102335 || || |||||||| || ||| || ||||| ||| Sbjct 668780 TCCCGCGACGAGGGCCTGCACTGCGACTTTGCCGTG 668745 >seq4488 Length=490991 Score = 95.1 bits (104), Expect = 2e-14 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 176020 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 176079 |||||| || ||| | | || ||||| |||||||| | ||||| || ||||| ||||| Sbjct 138696 ATCCTTTCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTAATATT 138637 Query 176080 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 176138 ||||| |||| ||| | |||| || || || || || || || || || |||| Sbjct 138636 GTTTGCGCCCACAAAGTTCTGGGCCAGATTAACGATTGTCATCTGC-AGCGAAACCTCAC 138578 Query 176139 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 176198 |||||||||| || | |||| || || | | | | ||| ||||| |||| |||| Sbjct 138577 CGTGGTGGTAGGCCGACATCTCGGCCACGGAACCAGATAGCTGGGCCACCTTCACCTCAC 138518 Query 176199 CCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 176258 |||| || | | ||| || | | |||| |||||||| || ||||| || || | Sbjct 138517 GCTTGTCGTTTCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAGGCCGT 138458 Query 176259 CCGCCA 176264 || ||| Sbjct 138457 CCACCA 138452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620699545496560