Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq5396 132 6e-26 seq5120 86.0 7e-12 >seq5396 Length=9561034 Score = 132 bits (146), Expect = 6e-26 Identities = 910/1453 (63%), Gaps = 56/1453 (4%) Strand=Plus/Plus Query 109401 CTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCAT 109460 ||| | ||| || || ||||| || |||||||||||||| ||||| | || | || || Sbjct 8233794 CTTTGTGCGCAGGTAGTACATTCCAGTTTTGAGACCAGCTTTCCAGGAATAGAAGTGTAT 8233853 Query 109461 TGAAGAGAGTTTGGAA-AGTGTCGGACTCT-CCATAAACAAGTTCATCGACTGAGACTGA 109518 || | |||||| | ||| | | |||| ||| | | ||| | ||||||| |||| Sbjct 8233854 GGACGTGAGTTTTCCATAGTTTGG--CTCTGCCACATGAATGTTGAACGACTGACTCTGA 8233911 Query 109519 TCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAG 109578 || ||||| || ||||| || ||||| | ||| | |||| |||||||| Sbjct 8233912 TCTATGAACGCTCCTCGATCTGCGGCCATCTTAATGGTCGACTTCACTGAGATTTCCCAC 8233971 Query 109579 ACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCA 109638 || || ||||||| || || | | ||| ||| || | || || || || ||||| Sbjct 8233972 ACTGTTTTGTACAGATCGCGGACCTTCTGGGGGATGGCCTCAATATTCTGGATTGAGCC- 8234030 Query 109639 CCAGCCTTCACCATGA---GATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGA 109695 || || | |||| | | |||||| || | ||| | | | || | || Sbjct 8234031 CCTGCTGGAA--ATGATTTGGTTCTTCATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGG 8234088 Query 109696 TCG-TCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTA 109754 || | ||||| ||| | ||| ||||| ||||| |||| || || | | || Sbjct 8234089 TCCCTTAACAA-ATGATGGTTAACCACTTGGAATTCGCCAGACAGAACTCGCCTGGTATA 8234147 Query 109755 GATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGC 109814 || || || ||||| || |||||| | || |||||||| | ||||| |||||||| || Sbjct 8234148 AATATTCGTTGTGTACGGCTCGAAAGATTCGTTGTTGCCCATAATTTGGGCAGTGGACGC 8234207 Query 109815 TGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACG 109874 |||||||| || || | | || ||| |||| ||| | | ||| | ||| Sbjct 8234208 AGTGGGCATAGGCGCAACCAACAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTCCTT 8234267 Query 109875 CATTGCGTCCCAATCATAACGACCACTAAATTTAGTCT-CACCAT--CCCACATATCTGG 109931 || | | ||| || ||| || || ||| ||| | ||||||| || Sbjct 8234268 CAGTTTCTGCCAGTC-------CCA--AAGGTTTGTCGGCACTTTGTCCCACATGTCGTA 8234318 Query 109932 TTGAAGTACACC----CTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAA 109987 || || | || |||| | ||| |||| | | || || | || || | Sbjct 8234319 CTGCAGAATGCCTTTGCTCA----CGGGACTTCCCTCATAGGTTTCATATGGGCCGTCGA 8234374 Query 109988 CCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAG 110047 || ||||| || | || || || || | | || || || || || || || Sbjct 8234375 TCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAGATGGTTTCGAATATCTGCT 8234434 Query 110048 CATTCATGAGGCGAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCG 110107 ||||| ||| | | ||||||| || |||| | || |||||| | | || | Sbjct 8234435 GATTCAAGAGACCGGCTTCTTCACTTTCATAGGGGAAACGCATAAGAATTAGGGCGTCAG 8234494 Query 110108 CTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTCATGTTAGA-------GCGTCGA 110160 | | ||||| ||||||| || | ||| |||||| ||| ||| || || || Sbjct 8234495 CGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCAAGTTGGATTTCTTTGCCTCTG 8234554 Query 110161 GCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTC 110220 |||| |||||| ||||| ||||||| | || |||||||| || || ||| Sbjct 8234555 GCAG-------GGGGTAGAAGTTTATATCGATGATCTTGTTAAGATTCTTGGTAACCGTC 8234607 Query 110221 TTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCCTTATTGACATATTTG 110280 || || | ||| | ||||| | | ||||| | || ||| || | |||| | || Sbjct 8234608 TTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGTCTTC---TCGGGAGTGACGAACATG 8234664 Query 110281 GGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAA 110340 ||| || || || || | ||||| || | | ||||||| || ||| |||| Sbjct 8234665 TTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAGTACTCCACG 8234724 Query 110341 ATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAG 110400 ||||| || ||||||||| | ||| ||| || | |||| ||| || || | Sbjct 8234725 ATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTG 8234784 Query 110401 TTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATG 110460 ||||| ||||||||| | |||||||| ||| | |||||||| ||||| || | |||| Sbjct 8234785 TTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAATG 8234844 Query 110461 GCCTTCCATAC--ATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCTTCCTCCTCGTACT 110518 || ||| | || | || || ||| ||| || |||| || | ||| |||| Sbjct 8234845 GCGAACCACAAGGATTGA--GCCTTAACCGTTCGGTTGGCACGACCCTCTTGCTCATACT 8234902 Query 110519 TGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGG 110578 | ||||| | || ||||| | || ||||||| ||| || || | | Sbjct 8234903 TCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGGCATTTATGCG 8234962 Query 110579 GACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCC 110638 |||| | || ||||||| |||| |||| || | |||||| || || || || |||| Sbjct 8234963 GACACATTAGTGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCC 8235022 Query 110639 ACATCGCCGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCT 110698 ||| || |||| || || ||| ||| ||| || | || ||| || | Sbjct 8235023 ACAGGGCGTAGAACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTAAGTT 8235082 Query 110699 CCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTAC 110758 ||| || || | || ||||||||||| || || || || | || | || || || Sbjct 8235083 CCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGAC 8235142 Query 110759 GA---CGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAA 110815 | | || |||| | |||||||| || ||||||||||| | ||| |||| Sbjct 8235143 GCTTGCCGCCTCCCTGATCGACATAGCGCGCCACATTGTTGAAGACCCTCAACATGGGAA 8235202 Query 110816 TAATTCCATCGGA 110828 | |||| ||| Sbjct 8235203 CCAGGCCATTGGA 8235215 >seq5120 Length=3129309 Score = 86.0 bits (94), Expect = 7e-12 Identities = 75/90 (83%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 136717 TAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCC-GT 136775 ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||| |||| Sbjct 3121319 TAGCTCAGTTGGTTAGAGCGTCGTGCTAATAACGCGAAGGTCGCGGGTTCGATCCCCTCA 3121378 Query 136776 TGGG--AACAGCTTTT-AGATATATTTTTT 136802 |||| || | ||||| ||||||||||| Sbjct 3121379 TGGGCCAATAACTTTTCTTATATATTTTTT 3121408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588935338569400