Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq5395 111 1e-19 seq5396 104 2e-17 seq5402 102 5e-17 seq5238 84.2 1e-11 >seq5395 Length=2659632 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 975549 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCC 975608 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || ||||||||| | || | ||||||||||| Sbjct 975609 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 975668 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || || ||| || || | ||| ||||| || Sbjct 975669 ATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTG 975728 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || || || |||||||| ||||||||||| Sbjct 975729 CCAGTCAGGGTCTTCACGAAGATCTGCAT 975757 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||| ||||| || || || ||| | ||| | || ||| Sbjct 975777 ACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCC 975836 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| |||||||| || || || || ||||||||| | || | ||||||||||| Sbjct 975837 AGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGG 975896 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || || | || || ||| || || | ||| ||||| | Sbjct 975897 ATCTTGGCCTTAAC--ATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCT 975954 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || || |||||||| || || ||||| || Sbjct 975955 TGCCAGTCAGGGTCTTCACGAAAATTTGCATGTT 975988 >seq5396 Length=9561034 Score = 104 bits (114), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| || ||||||||||||||||| || ||| | || |||| ||| Sbjct 8331059 ACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCC 8331000 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || || ||||| ||| | || | || || ||||| | Sbjct 8330999 AGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGA 8330940 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| || | ||||| | ||| | || || || | || ||||| Sbjct 8330939 ATCTTGGCTTTGAC--AT--TTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTGATGGT 8330884 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| ||||| || ||||||||||| || Sbjct 8330883 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 8330848 >seq5402 Length=10656099 Score = 102 bits (112), Expect = 5e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || ||||| ||||| ||||| || ||| | ||| | || ||| Sbjct 571657 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTCCTCC 571716 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || ||||| || || || || ||||| ||| | || | ||||||||||| Sbjct 571717 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 571776 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| || || || || |||| || || ||| || || | ||| ||||| | Sbjct 571777 ATCTTGGCCTTCAC--ATTCTCAATCGTGTCGGAGGGCTCCACCTCCAAGGTAATGGTCT 571834 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 | || || | |||||||||||||||||||| || Sbjct 571835 TACCAGTCAAGGTCTTCACAAAGATCTGCATTTT 571868 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| || || ||||| | ||| | || || ||||| || ||||| || Sbjct 571447 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAG 571506 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || ||| Sbjct 571507 ATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTC 571566 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| | ||| || || | ||| ||||| || || || | |||||| ||| Sbjct 571567 TCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACA 571626 Query 34971 AAGATCTGCATA 34982 |||||||||||| Sbjct 571627 AAGATCTGCATA 571638 >seq5238 Length=3592495 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || ||| | || | || |||||||| || ||||| || Sbjct 2679424 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAG 2679365 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | ||||||||||| ||||| || || || Sbjct 2679364 ATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCAC--AT 2679307 Query 34911 GCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | ||||| | ||| | ||| || || | ||| ||||| || || ||||| || || Sbjct 2679306 --TCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTT 2679249 Query 34967 CACAAAGATCTGCAT 34981 ||| ||||| ||||| Sbjct 2679248 CACGAAGATTTGCAT 2679234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324611748405144