Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04]
5,523 sequences; 169,378,599 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq5165 199 3e-46
seq5396 104 2e-17
>seq5165
Length=2344106
Score = 199 bits (220), Expect = 3e-46
Identities = 448/670 (67%), Gaps = 10/670 (1%)
Strand=Plus/Plus
Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784
||||| || | || || |||| | || ||| ||| |||| ||||| | |||
Sbjct 2001962 AAGTCCTCGATGTCCTGCACCTGGCGCTTGATCACCAGCTTGGGGAAGGGCCGCGGCGTG 2002021
Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844
| ||| ||||| | | ||||| |||||||| | ||| |||||||| | ||| |||| |
Sbjct 2002022 CGCTCCAGCTGCTCCCTTAGCGGCTCCACGTGGTTCAGATAGACGTGCGTGTCGCCCATG 2002081
Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904
||||| ||||| || || || | || || || || || || ||||||| ||||| ||
Sbjct 2002082 GTGTGCACAAAGTCGCCGGGCTTCAGGCCCGTCACATGGGCGATCATGTGGGTGAGCAGG 2002141
Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964
| |||| ||||||||| ||||| || || || |||||||| | ||| ||||| |||
Sbjct 2002142 GCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCTTTGGTACAGC 2002201
Query 29965 TGACACGAGAGCTCTCCGTCGCTC-------ACGTAAAACTGACACATGGTGTGGCACGG 30017
|| || |||||||| ||| ||| | || || ||||| || | |||||||||
Sbjct 2002202 TGGCAGGAGAGCTCACCG-CGCGCCTGCGAGACATAGAACTGGGCCAGGCAGTGGCACGG 2002260
Query 30018 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 30077
||||| ||||| | ||| ||| |||||||| ||| |||||||||||||||
Sbjct 2002261 CGGAAGGGCCATCTTTGGTATGTCGAGGGGATTCCAGGCCGACATGATGATGCGCCTGTC 2002320
Query 30078 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137
|| || ||| |||| ||| | | | ||| ||| || | ||| | ||
Sbjct 2002321 CGAGGGATTCTTCTTGATCGTGTCGATCACCTGGCGCAACTGGTCGATGCCCTTGCCGCT 2002380
Query 30138 GTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACA 30196
||| || | | || || | |||||| || || || || | ||||||||| ||||| |
Sbjct 2002381 GTAATCGTCGTCGCAGGTGC-CGTACTCGGCCCCAAAGTGACGCCACTGGAAGCCGTAAA 2002439
Query 30197 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30256
|||| |||||||| || | | | | | | ||| ||||||| || || ||||
Sbjct 2002440 CCGGGCCCAGGTCGCCGACGGCGCGCTCCGTGTGCCCCAGTTTGTCCAGGAACTCCCTGG 2002499
Query 30257 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 30316
| ||| |||||||||| | || ||| | ||| |||| || || |
Sbjct 2002500 TGCTGTTCTCGTCCCAGATGTGCACGTTCTTGGCCTGCAGCAGCTTGGCGTCCGTCTTGC 2002559
Query 30317 CTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGA 30376
| |||||||| | ||||||||| | ||| | | ||||| | |||||| || |
Sbjct 2002560 CGGCCACGAACCAGATCAGCTCCTCGGCCACGCCGCGGAAGAAGACGCGCTTGGTGGTCA 2002619
Query 30377 GGAGGGGAAA 30386
| ||||||||
Sbjct 2002620 GCAGGGGAAA 2002629
>seq5396
Length=9561034
Score = 104 bits (114), Expect = 2e-17
Identities = 117/157 (75%), Gaps = 0/157 (0%)
Strand=Plus/Plus
Query 48422 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 48481
||| ||||| | ||| ||||||||||| | ||||| ||||||||| |||||||| ||
Sbjct 2096245 GTTGAACAGGACGACTCCGAGGTTGCCGCGATAGTCCTCGTCCACCACGCCGGCACCCAC 2096304
Query 48482 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 48541
|| || || || |||| |||||| || || | |||||||| | |||||| ||||
Sbjct 2096305 ATCGATGAAGTTCTTCACGGCCAGCCCTGATCGCGGAGCCACTCGTCCGTAGGAGCCCTC 2096364
Query 48542 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCC 48578
||| | || ||| |||||| ||||| || | ||||
Sbjct 2096365 GGGAACCTGCACTTGCAGGTCGGTCTTCACGATGGCC 2096401
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408590095310879
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |