Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq5165 199 3e-46 seq5396 104 2e-17 >seq5165 Length=2344106 Score = 199 bits (220), Expect = 3e-46 Identities = 448/670 (67%), Gaps = 10/670 (1%) Strand=Plus/Plus Query 29725 AAGTCGTCCAGGTTCTCCACCCTCCTGTTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCC 29784 ||||| || | || || |||| | || ||| ||| |||| ||||| | ||| Sbjct 2001962 AAGTCCTCGATGTCCTGCACCTGGCGCTTGATCACCAGCTTGGGGAAGGGCCGCGGCGTG 2002021 Query 29785 CTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGG 29844 | ||| ||||| | | ||||| |||||||| | ||| |||||||| | ||| |||| | Sbjct 2002022 CGCTCCAGCTGCTCCCTTAGCGGCTCCACGTGGTTCAGATAGACGTGCGTGTCGCCCATG 2002081 Query 29845 GTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGA 29904 ||||| ||||| || || || | || || || || || || ||||||| ||||| || Sbjct 2002082 GTGTGCACAAAGTCGCCGGGCTTCAGGCCCGTCACATGGGCGATCATGTGGGTGAGCAGG 2002141 Query 29905 GAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGC 29964 | |||| ||||||||| ||||| || || || |||||||| | ||| ||||| ||| Sbjct 2002142 GCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCTTTGGTACAGC 2002201 Query 29965 TGACACGAGAGCTCTCCGTCGCTC-------ACGTAAAACTGACACATGGTGTGGCACGG 30017 || || |||||||| ||| ||| | || || ||||| || | ||||||||| Sbjct 2002202 TGGCAGGAGAGCTCACCG-CGCGCCTGCGAGACATAGAACTGGGCCAGGCAGTGGCACGG 2002260 Query 30018 AGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTC 30077 ||||| ||||| | ||| ||| |||||||| ||| ||||||||||||||| Sbjct 2002261 CGGAAGGGCCATCTTTGGTATGTCGAGGGGATTCCAGGCCGACATGATGATGCGCCTGTC 2002320 Query 30078 TTCTGGGTTGTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGA 30137 || || ||| |||| ||| | | | ||| ||| || | ||| | || Sbjct 2002321 CGAGGGATTCTTCTTGATCGTGTCGATCACCTGGCGCAACTGGTCGATGCCCTTGCCGCT 2002380 Query 30138 GTAGTC-TGCCCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACA 30196 ||| || | | || || | |||||| || || || || | ||||||||| ||||| | Sbjct 2002381 GTAATCGTCGTCGCAGGTGC-CGTACTCGGCCCCAAAGTGACGCCACTGGAAGCCGTAAA 2002439 Query 30197 CCGGTCCCAGGTCTCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGG 30256 |||| |||||||| || | | | | | | ||| ||||||| || || |||| Sbjct 2002440 CCGGGCCCAGGTCGCCGACGGCGCGCTCCGTGTGCCCCAGTTTGTCCAGGAACTCCCTGG 2002499 Query 30257 AACCGTTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACC 30316 | ||| |||||||||| | || ||| | ||| |||| || || | Sbjct 2002500 TGCTGTTCTCGTCCCAGATGTGCACGTTCTTGGCCTGCAGCAGCTTGGCGTCCGTCTTGC 2002559 Query 30317 CTCTGACGAACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGA 30376 | |||||||| | ||||||||| | ||| | | ||||| | |||||| || | Sbjct 2002560 CGGCCACGAACCAGATCAGCTCCTCGGCCACGCCGCGGAAGAAGACGCGCTTGGTGGTCA 2002619 Query 30377 GGAGGGGAAA 30386 | |||||||| Sbjct 2002620 GCAGGGGAAA 2002629 >seq5396 Length=9561034 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 48422 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 48481 ||| ||||| | ||| ||||||||||| | ||||| ||||||||| |||||||| || Sbjct 2096245 GTTGAACAGGACGACTCCGAGGTTGCCGCGATAGTCCTCGTCCACCACGCCGGCACCCAC 2096304 Query 48482 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 48541 || || || || |||| |||||| || || | |||||||| | |||||| |||| Sbjct 2096305 ATCGATGAAGTTCTTCACGGCCAGCCCTGATCGCGGAGCCACTCGTCCGTAGGAGCCCTC 2096364 Query 48542 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCC 48578 ||| | || ||| |||||| ||||| || | |||| Sbjct 2096365 GGGAACCTGCACTTGCAGGTCGGTCTTCACGATGGCC 2096401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408590095310879