Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq5267 309 6e-79 seq5396 212 1e-49 >seq5267 Length=4296760 Score = 309 bits (342), Expect = 6e-79 Identities = 572/827 (69%), Gaps = 19/827 (2%) Strand=Plus/Plus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| || ||||| | ||||| |||||||| ||||| || |||| |||||| |||| Sbjct 668457 CTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTC 668516 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAG-GCCCATCTGTTCCAGCA 47957 ||||||| ||||||||| || || || | | || || ||||| || |||||| Sbjct 668517 CATGAAGTTGAAGGGGTTCTTGGTATTGTAGATCT-TGCCAACGCCCAGCTCCACCAGCA 668575 Query 47958 GGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTATGAGGG 48017 | ||||||| ||| | |||||||| | ||||||||| | |||||||| |||||| Sbjct 668576 GACGATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATGCCGATGAGGT 668635 Query 48018 ACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCT 48077 |||||||| || | ||||| ||||||| |||||| ||| || || | | |||| Sbjct 668636 TTACGGGCAAGGCATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATCGCGGATGATCT 668695 Query 48078 GCTTAACGCGGGACTCTGAG---GGTTTGTTGCGC-AGGTGCTTGGCATAGAGCATGCA- 48132 | | ||| ||| | | || | | ||| | | ||||| | | | || ||| Sbjct 668696 CGATGATGCG---CTC-GCGCCTGGGTCGCTGCACCAAGTGCTGGA---ACATCA-GCAC 668747 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||||| ||| ||||| ||| ||||||| ||||||||||| || || Sbjct 668748 GGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGTCC 668807 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | || || ||||||||||| | ||||| ||| ||||||||| Sbjct 668808 CGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGAT 668867 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 |||||| || || || || || ||| | ||| ||||| || |||| ||||| Sbjct 668868 GCCCTCGACGGCGGCAAAGGCAATGATGCGCTCCCCGAAGTTGGCCGCCTTGGAGGAGAT 668927 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAA 48372 ||||||||| |||||||| ||||| ||| | ||||| ||||| ||||| ||| Sbjct 668928 CCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCACAGCGGGCATTGTCTCGATGGCGTTGAA 668987 Query 48373 GAGCTTCTTGCACTCACCTGCG--TCCGCAACATAGGTAGTGAGCAGCTTTGCGTACATC 48430 || | | || || |||| ||| | ||||| || |||| ||||||| Sbjct 668988 CAGGTATTCGCGCT--GGTGCGGATCCCGGATGTAGGTGTCGATCAGCACACTGTACATC 669045 Query 48431 TCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACC 48490 || |||||||| ||||| || ||||||||||| || |||||| | ||||| | | Sbjct 669046 TCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGAGCCTCCGTGATC 669105 Query 48491 TGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCA 48550 ||||| || | ||| | ||| | ||| ||||| || || || ||||| || || || Sbjct 669106 TGCACCTCCTGGCTGAAGCGCTCGACCAGGTTCTCGTTAACGATGCCATCGGAGGCGGCG 669165 Query 48551 AAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGCCC 48610 |||||||| || || || | ||| |||||||||| || | || | |||| | Sbjct 669166 AAGAAGGCCAGCACGTGCGAGATGAAGTGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCG 669225 Query 48611 TGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 | ||| ||| || ||||| || ||||| |||||||| || || Sbjct 669226 GTCAGGTCCTTGGAGAGATCCACCTCCTCCACGGTCCAGAAAGAGGC 669272 >seq5396 Length=9561034 Score = 212 bits (234), Expect = 1e-49 Identities = 857/1323 (65%), Gaps = 68/1323 (5%) Strand=Plus/Plus Query 212904 TGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTG 212963 ||| |||| || | ||||| || || || || || | ||| |||| || | ||| Sbjct 8234101 TGATGGTTAACCACTTGGAATTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTG 8234160 Query 212964 TAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGA 213023 || ||||||| |||||||| |||| ||| || |||||| || |||||||| || Sbjct 8234161 TACGGCTCGAAAGATTCGTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGC 8234220 Query 213024 GCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGA-AGCT-CTGCCC 213081 || |||| || ||||| || ||||||| |||| | | || || | ||||| Sbjct 8234221 GCAACCAACAGGGAGTTCCGGACACCGTGCTGCTTGATG-GACTCCTTCAGTTTCTGCC- 8234278 Query 213082 AGTCCCATCTGCCAGACAGGTCCTCGTC-CTTCACGTTCCACATGTCAAACTGCAAGATG 213140 ||||||| || | | ||| | ||| || ||||||||| |||||| ||| Sbjct 8234279 AGTCCCAA-----AG---GTTTGTCGGCACTTT--GTCCCACATGTCGTACTGCAGAATG 8234328 Query 213141 CCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAGCTCG 213200 |||||||||||||| || |||| || | || ||||| | || |||||| || Sbjct 8234329 CCTTTGCTCACGGGACTTCCCTCATAGGTTTCATATGGGCCGTCGATCTGGGCCAGTTCA 8234388 Query 213201 CAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGA-------- 213252 || || | |||||| |||||||||||||||| ||||||| | || | Sbjct 8234389 CAACTGGCTTCCAGGGCGCCGTAGTAGATGGTTTCGAATATCTGCTGATTCAAGAGACCG 8234448 Query 213253 GCTTCTTGGCCTC--TGGGGACGTGAAGGGCATCATCATGCGTTGGAACACATCAGCCAG 213310 ||||||| | | | ||| ||| |||| | || | || | ||||| | Sbjct 8234449 GCTTCTTCACTTTCATAGGG----GAAACGCATAAGAATTAG--GG----CGTCAGCGAA 8234498 Query 213311 CCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGACTTGGAGCACTCCTCCAA 213370 |||||||| |||||||| | ||| | || |||| ||| || || ||| || Sbjct 8234499 TCCCTGGACACCGATGCCCACGGGACGATGCCTCAAGTTGGATTTCTTTGCCTCTGGCAG 8234558 Query 213371 GGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGACATG 213430 |||||| ||||| |||||||||||||| || || ||| || ||||| || | Sbjct 8234559 GGGGTAGAAGTTTATATCGATGATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACTTC 8234618 Query 213431 GGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGGCGAT 213490 || | || | || | | || | | | || || ||| |||||||| Sbjct 8234619 CTTAAGTTTCTTGAAATCGTAT--GTCTTCTCGGGAGTG-ACGAACATGTTGAGGGCGAT 8234675 Query 213491 GCTGGCCAGGTTGCAAACGGCCACCTCCT---GAGAGTCTGTGTACTCCATGATCTCGGT 213547 | |||| |||||| || || | ||| | ||||| | |||||||| ||| || || Sbjct 8234676 GGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAG---GAGTACTCCACGATTTCTGT 8234732 Query 213548 GCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGGCAGA 213607 ||||| ||||||||| ||||||||| | ||||| ||||| ||| |||| | Sbjct 8234733 GCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGC 8234792 Query 213608 ATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGCTCCA 213667 |||||| | |||||||||||| || || || | ||| | | | | || | ||| Sbjct 8234793 ATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAATGGCGAACCA 8234852 Query 213668 GAGGTACCTGGCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTACTGTTCGTA 213727 | | | ||||| ||| || || || || | || || |||| || || Sbjct 8234853 CAAGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTC--TTGC-TCATACTTCTCATA 8234909 Query 213728 GAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGG-ATGCGGGACACA 213786 | || | |||||| | |||||| || || || || || || |||||| ||||| Sbjct 8234910 CAACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGGCATTTATGCGG-ACACA 8234968 Query 213787 TGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGCG 213846 | || ||| || || | | ||| | || ||| || || || || | |||||| | Sbjct 8234969 TTAGTGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGG 8235028 Query 213847 CGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCAGATCTAGAA 213906 || |||||| || | || | |||| ||| || | ||| || || || || | Sbjct 8235029 CGTAGAACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTAAGTTCCAGGA 8235088 Query 213907 AGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCTCTTGC 213966 | ||||||| ||||| |||||| ||||||| ||| ||||||||||| || || | ||||| Sbjct 8235089 ACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGC 8235148 Query 213967 CG---CCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGGGTACCAGCC 214023 || ||||| || || | ||||| ||||||||| | || | ||| ||||| | Sbjct 8235149 CGCCTCCCTGATCGACATAGCGCGCCACATTGTTGAAGACCCTCAACATGGGAACCAGGC 8235208 Query 214024 CGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCC----CTCAGGTTGCTC 214079 | ||||| ||||| | | |||| | || ||| || | || ||| || ||| Sbjct 8235209 CATTGGAAGTGCCGTTCG-TGCCGC-AAAT-CGA---GGTGCCCTTTGCTC-GGATGC-A 8235260 Query 214080 ATGGA----GAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAGT 214135 ||||| || || ||||| ||||| |||| |||||||||||||| || ||| | Sbjct 8235261 ATGGACGTTAAGTCCAATGCCGCCGGCCGACTTCGAGATCATGGCGCACTGCTCCACGGA 8235320 Query 214136 CTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCTG 214195 || | ||||| | ||| ||| |||| | | ||| | ||| || ||| ||||| Sbjct 8235321 CTTAAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAAGAGGAAACAAGACGACAGCTG 8235380 Query 214196 GGG 214198 || Sbjct 8235381 CGG 8235383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931468489304320