Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq5267 208 1e-48 >seq5267 Length=4296760 Score = 208 bits (230), Expect = 1e-48 Identities = 532/814 (65%), Gaps = 11/814 (1%) Strand=Plus/Minus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTACGCTCTATCCAA 25571 |||||||| || ||| | ||||| |||||||| || || |||| || || | Sbjct 669264 CTGGACCGTGGAGGAGGTGGATCTCTCCAAGGACCTGACCGACTGGCACCGCCTGAAGGA 669205 Query 25572 AGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGT 25631 ||||||| || || || | ||||| |||| ||||| || ||||| ||||| || || Sbjct 669204 CGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCATCGT 669145 Query 25632 GAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTT 25691 |||||||| ||| |||| | |||| | ||| |||||| | |||||| || || Sbjct 669144 TAACGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTGCAGATCACGGAGGCTCGCTGCTT 669085 Query 25692 CTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTATGCCAAGCTTCTGAT 25751 ||| || |||||||| ||||| || || |||||||| ||| |||| || | ||||| Sbjct 669084 CTATGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTA---CAGTGTGCTGAT 669028 Query 25752 G---ACGTACATTACAGACGTCGC-CGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACA 25807 || ||||| || ||| | || | || ||||| ||||||||| | Sbjct 669027 CGACACCTACATCCGGGATC-CGCACCAGCGCGAATACCTGTTCAACGCCATCGAGACAA 668969 Query 25808 TACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCGCTA 25867 | ||| | ||| | |||||| |||||| | |||||| | | || || | Sbjct 668968 TGCCCGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATCTCCTCCAAGGCGGCCA 668909 Query 25868 CGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGT 25927 || || ||||| | | |||||||| || || ||||||||||| |||||||| | Sbjct 668908 ACTTCGGGGAGCGCATCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCT 668849 Query 25928 TTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACG 25987 | || |||| |||||||| ||| || || ||||| || ||| ||| ||||||| Sbjct 668848 TCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACG 668789 Query 25988 AGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCC 26047 |||||||| | | |||||||| || ||| | || |||||| ||| | | | | | Sbjct 668788 AGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTTGCCGTGCTGATGTTCCAG---C 668732 Query 26048 ACTTGCTCCACAAACCTTCTCAAGAGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGA 26107 ||||| | || ||| | ||| | || | |||||| || ||||||| | Sbjct 668731 ACTTGGTGCAGCGACCCAGGCGCGAGCGCATCATCGAGATCATCCGCGATGCTGTGGCCA 668672 Query 26108 TCGAGAAGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGAC 26167 | ||| ||||||| | | |||||||| | | Sbjct 668671 TAGAGCAGGAGTTCCTCACCGATGCCTTGCCCGTAAACCTCATCGGCATGAATTGCGACC 668612 Query 26168 TCATGAGCCAATACATTGAGTATGTGGCCGACCATCTGCTGTGCCAGCTGGGACTCGCCA 26227 ||||| || ||||| || | ||||| || | ||||||| ||||||| | | || Sbjct 668611 TCATGTCGCAGTACATCGAATTCGTGGCGGATCGTCTGCTGGTGGAGCTGGGCGTTGGCA 668552 Query 26228 GACTCTACAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGA 26287 |||||| ||| ||||| ||| |||| ||||| | || ||| |||| || |||| Sbjct 668551 AGATCTACAATACCAAGAACCCCTTCAACTTCATGGAGATGATCTCGCTGGACGGCAAGA 668492 Query 26288 CCAACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 |||||||||| || |||| ||| ||||| || || Sbjct 668491 CCAACTTCTTCGAGAAGAAGGTGGGCGAGTACCA 668458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928780674877120