Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq1953 100 9e-17 >seq1953 Length=1017 Score = 100 bits (110), Expect = 9e-17 Identities = 274/415 (66%), Gaps = 10/415 (2%) Strand=Plus/Plus Query 17245 CGCGCCAGATATTTTAATCGGCGGCACGCCATGTCAGGCGTTTAGCGTGTCAGGCAGGCG 17304 ||||||||| | | ||||||||||||| || ||| |||| |||||| | ||| || Sbjct 157 CGCGCCAGACCTCCTGGTCGGCGGCACGCCGTGCCAGTCGTTCAGCGTGGCCGGCGCCCG 216 Query 17305 GGAGGGTTTAAGCGACCCGCGAGGCCAATTAACGCTGGCGTTTGTTGATATTGCTGATGC 17364 || | |||||||| ||| | || || || | ||| || |||| |||| Sbjct 217 CCGTGGCCTGGCTGACCCGCGCGGCGCCCTGACCCTTGCCTATGTGGAGCTTGCAAATGC 276 Query 17365 AATAGACGATGTGAGA----AAGGGCGCAGACCAGCCAGAATCAATTATTGTTTGGGAAA 17420 || ||| | | ||| ||| | || ||| | ||| | || ||||||| Sbjct 277 CATCGACCAAACCCGCCGCCAAGACCGCCGCCC-GCCGG---CAACGCTCGTCTGGGAAA 332 Query 17421 ACGTAACAGGAGTATTAAAC-AGTGCAGACAACGCATTCGGTTGTTTTCTCGGCGCGCTG 17479 |||| | || || | | | | |||| |||||| ||||| || || || || ||| Sbjct 333 ACGTCCCCGGCGTCCTCAGCGACCGCAG-CAACGCCTTCGGACACTTCCTGGGAGCACTG 391 Query 17480 GCCGGGGAAAGTAGCGCATTACAGCCAGCAAGGGGAAGATGGCCGAACGCTGGTATTGTG 17539 ||||| ||||| | || | | || || || || |||| || |||| ||| |||| Sbjct 392 GCCGGCGAAAGCCGTGCGCTCGAACCGCCAGGGCAAAAATGGGCGCACGCAGGTTGTGTG 451 Query 17540 TCTGGACCATCGCGCACCGTCGCTTGGCGAGTTCTCGACGCTAAATATTTCGGAGTCCCC 17599 |||||||| |||| | |||| ||||| | ||||| ||| |||||||||| ||| || Sbjct 452 TCTGGACCCCGGCGCCGCATCGCCTGGCGCTTGCTCGATGCTCAATATTTCGGCGTCGCC 511 Query 17600 CAACAGCGTAAGCGAGTGTTCGTTATTGCCAGCGCTCGACCAGACTTCGATCCCG 17654 |||| ||| || ||||| || | || || | | || | | ||||||||| Sbjct 512 CAACGGCGCCGTCGCGTGTTTCTTGTGGCAAGTGGTGGAGGTGGCGTCGATCCCG 566 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154921038740416