Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5396 120 2e-21 seq5114 98.7 6e-15 >seq5396 Length=9561034 Score = 120 bits (132), Expect = 2e-21 Identities = 132/176 (75%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 ||||| |||| || || | | |||||| || ||||| ||||| || || ||||| || Sbjct 8331029 TTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGC 8330970 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 ||||| |||||||||||||| ||||| |||||||| ||||||| ||| |||||||| Sbjct 8330969 TGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCC 8330910 Query 480714 GTGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || ||||| || || || || || ||||| ||||||||||| || || Sbjct 8330909 GAAGGTTCGACCTCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 8330854 >seq5114 Length=3386121 Score = 98.7 bits (108), Expect = 6e-15 Identities = 252/381 (66%), Gaps = 2/381 (1%) Strand=Plus/Minus Query 475793 AATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATCAGGTCAA 475852 |||||||| || ||||| || ||||||||||| | || || || ||| | || || | | Sbjct 227403 AATCCTGACGAGGCTGTCGCCTATGGAGCTGCCATTCAGGCGGCCATTCTGTCGGG-CGA 227345 Query 475853 TCAGACGAGA-AACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCATTAGGTCT 475911 ||| || || | || | || | || || || ||| | || || || || || | Sbjct 227344 CGAGAGCAGTCAAATCAAGGACGTTCTCCTGGTGGATGTAGCCCCTCTCTCGTTGGGCAT 227285 Query 475912 TGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCATGCAA 475971 ||| || | || ||| | ||||| || || ||||| | || | | ||||||||||| Sbjct 227284 TGAGACCGCCGGCGGGGTGATGACCAAGCTGATTGAGCGCAACAGCCGCATCCCATGCAA 227225 Query 475972 AAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAAATCTT 476031 | || || || |||| || | || || || | | || |||||||| | || Sbjct 227224 GCAGTCTAAGACCTTCACCACCTACGCGGACAACCAGCCGGCGGTGACCATCCAGGTGTT 227165 Query 476032 TGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGG 476091 || || ||| | |||| || || || ||| || || || || || || || Sbjct 227164 CGAGGGCGAACGCGCTCTCACCAAGGACAACAACGTGCTGGGCACCTTCAACCTGACGGG 227105 Query 476092 TATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAA 476151 ||||| || |||||||| ||||| || | || || || || || || | ||||| || Sbjct 227104 CATTCCGCCCGCTCCCAGGGGAGTGCCCAAGATCGATGTCACCTTCGACCTGGATGCTAA 227045 Query 476152 TGGTATTCTTAATGTTACTGC 476172 |||||| || ||||| || || Sbjct 227044 TGGTATCCTGAATGTGACCGC 227024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267942291732404