Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq4739 178 2e-38 seq5402 176 6e-38 seq5267 147 3e-29 seq5396 113 6e-19 seq4734 98.7 1e-14 >seq4739 Length=5756469 Score = 178 bits (196), Expect = 2e-38 Identities = 156/192 (81%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATC-TCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCC 1592164 |||||||||||||||||||| || || |||||| || || | | ||||| ||| | Sbjct 965259 AGAAGCGCACCGACGACATCATCTCC-TGGGACGCCGACTTCCTCAAGGTCGATCAGGGC 965201 Query 1592165 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTT 1592224 ||||| || ||| | ||||| ||||||||||| || ||||||||| ||||| || || Sbjct 965200 ACCCTGTTCGAGCTCATCCTGGCCGCCAACTATCTGGACATCAAGGGCCTGCTGGAGCTC 965141 Query 1592225 GGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACC 1592284 |||||| | |||||||||||||||||||||||| | ||||||||||||||||||||| Sbjct 965140 ACCTGCAAGACGGTGGCCAACATGATCAAGGGCAAGACACCCGAGGAGATCCGCAAGACC 965081 Query 1592285 TTTAACATCAAG 1592296 || ||||||||| Sbjct 965080 TTCAACATCAAG 965069 Score = 93.3 bits (102), Expect = 5e-13 Identities = 140/198 (71%), Gaps = 1/198 (1%) Strand=Plus/Minus Query 507077 TCGGGCAAGCCCACCAAGGGCCTCGTGGAGCGGTTCAAGGGCAAGGAGGGTAGGATCCGC 507136 |||||||||||| || | | || || ||| ||||||| |||||||| ||||| || Sbjct 556791 TCGGGCAAGCCCCTTAAAGCCATCAAGGCGCGTCTCAAGGGTAAGGAGGGCAGGATTCGT 556732 Query 507137 GGCAATTGCATGGGCAAGCGCGTCAACTTTACCGCGCGCGCCGTCATCAGCCCCGACCCC 507196 ||||| | ||||| || || || ||||| |||| || | ||||||| |||||| ||| Sbjct 556731 GGCAACTTGATGGGAAAACGTGTGGACTTTTCCGCCCGTACTGTCATCACCCCCGATCCC 556672 Query 507197 GAGATCGACATTGACGAGGTGGGCGTGCCCTATGAGATCGTCAAGACGCTCACCTTTCCC 507256 | | || ||| |||| || ||||| |||| | ||| || ||||| ||| Sbjct 556671 AACCTGCGTATCGACCAGGTCGGTGTGCCGCGCTCCATCGCCCAGAACCTGACCTTCCCC 556612 Query 507257 GAGCGCGTGACGCCCCTT 507274 |||| || || |||||| Sbjct 556611 GAGCTGGTCAC-CCCCTT 556595 Score = 89.7 bits (98), Expect = 6e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 507735 CCTACAACGCCGACTTTGACGGCGACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGG 507794 ||||||||||||| || ||||||||||||||||| ||||||||||| |||||| | | Sbjct 556313 CCTACAACGCCGATTTCGACGGCGACGAGATGAATCTGCACGTGCCGCAGTCCATGGAGA 556254 Query 507795 CGCGCGCCGAGGTG 507808 |||| ||||||||| Sbjct 556253 CGCGTGCCGAGGTG 556240 >seq5402 Length=10656099 Score = 176 bits (194), Expect = 6e-38 Identities = 379/558 (68%), Gaps = 14/558 (3%) Strand=Plus/Minus Query 1852106 GGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGTCGCGCGCAAAG 1852165 ||||| | | ||||| ||||||| ||||| | |||||||| | || ||| Sbjct 3696281 GGGTTCATGAAGTGGATGCGCTTCTCGTAGCCCAACTGCGGCAGGTACTTCTCCGAGAAG 3696222 Query 1852166 GCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGCTCG 1852225 | || |||||||||||||| || || ||||||||||| || | ||||| || |||| Sbjct 3696221 GTGAAGATCTTGCGCTGGTCCACGCCACCGAACTGGGCGTCCACCTTGAGGTACTCCTCG 3696162 Query 1852226 TCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCATCT-- 1852283 || |||||||||| | ||||| |||| | || || |||| |||| || Sbjct 3696161 TCCAGGGCCTGCAGGCCGGGGTACAGCAAGCCAGAAAGCAGGGGGTAC---TCCACCTGT 3696105 Query 1852284 -TGACCACCTGAGCGGCGGCCTTTTGCGC--CGTGCCGGTGCGC-ACGTGCGCCGCGAGT 1852339 ||||||||| ||| | ||||| | || ||||| || | | ||| | || ||| Sbjct 3696104 TTGACCACCTCGGCGCCCGCCTTCTTGGCATCGTGCTGGGTCACGACG-GAGCTT--AGT 3696048 Query 1852340 CGGTAGAGGTCGAGCGCGTAGGCGCCGCCGCACTGGTACTCGGTGCCGCGCACAAACTCG 1852399 ||||| || || | ||| | | ||||||| ||| |||| || |||| Sbjct 3696047 TTGTAGACATCCAGGGTGTATTCCTTGGACAACTGGTAGTCGCTGCCCTTGACGAACTTC 3695988 Query 1852400 AGTCCGCCCAGCGGCACGCCGATGT-GCTGGAGCATGGCCTTGATGGCAAACTCGTACCA 1852458 || | ||||||||||||| ||| ||| ||||||||||||||| | |||||| | Sbjct 3695987 AGCTTGTCCAGCGGCACGCCAATGGAGCTC-AGCATGGCCTTGATGACCTGCTCGTAGTA 3695929 Query 1852459 GCGGCACCGGTGTTCGACCAGGTCCCACGGCGTCTTGCCGTTGTCGAGGTGGGCGTGCAC 1852518 || || | || | |||| ||| |||| ||| |||||| |||| ||| || | Sbjct 3695928 CTGGGTGCGCAGCTCCAGCAGGGACCAGGGCGCCTTCATGTTGTCCAGGTAGGCATGGAG 3695869 Query 1852519 GTCGGCAAAGAGGATCTTGACCCGACAGCCGGCCTGGAGAAAGTCGGCCAGTTTGAAGAT 1852578 ||||| || ||||| | ||| ||||| |||| || |||||||| | || | || Sbjct 3695868 ATCGGCGAACAGGATGGTCACCTCGCAGCCTGCCTTCAGGAAGTCGGCAATCTTCGACAT 3695809 Query 1852579 GGGCACAAAGTAGCCTAGGTGCGGGTTGCCCGTCGGCGCCGTGCCCCAATATATGATCAG 1852638 |||||| |||||| | | || || |||||||||| |||||| ||||| || || |||| Sbjct 3695808 GGGCACGAAGTAGGCGACATGTGGCTTGCCCGTCGTCGCCGTTCCCCAGTAGATCTTCAG 3695749 Query 1852639 GGGGCGCTCGGCCATGAT 1852656 ||||| |||| ||| Sbjct 3695748 ATCCCGCTCCGCCAGGAT 3695731 Score = 132 bits (146), Expect = 6e-25 Identities = 242/349 (69%), Gaps = 8/349 (2%) Strand=Plus/Minus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCTCTTGGG 1573954 |||||| || ||| |||||||||||| | |||| || ||||| | ||||| |||| Sbjct 835738 GGGTCCTCCTGGCGTGGGCAAGACCACCACCATCCAATGCCTGGCCAGGATCCTCCTGGG 835679 Query 1573955 CGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACGT 1574014 | | ||||| || ||||| | ||||| || | ||||| || |||| || Sbjct 835678 AGACAGTTATAAGGAGGCTGTCCTCGAGTTAAACGCCTCCAATGAGCGAGGAATCGATGT 835619 Query 1574015 CGTGCGCAAGATCATCAAGCACCACGCCTC-CAAGAGGATCGAC-CTGCCGCCCGGACGC 1574072 |||||||| | |||||| ||| ||| ||| ||| ||||| | ||| | Sbjct 835618 GGTGCGCAACAAGATCAAGATGTTTGCCCAGCAAAAGGT--GACACTGCCCCGTGGAAGG 835561 Query 1574073 CACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCTG 1574132 |||||| | | |||||||||||||| ||| || | ||| || |||||||||||| || Sbjct 835560 CACAAGATTGTGATCCTCGACGAGGCGGACAGCATGACGGAGGGAGCCCAGCAGGCCTTG 835501 Query 1574133 CGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACGTCG 1574192 || ||||||||| | ||| || ||| ||| | || ||| |||| |||||||| Sbjct 835500 CGCCGCACCATGGAGATCTACAGCAGCACCACGAGATTCGCCTTGGCCTGCAACACCAGC 835441 Query 1574193 TCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTT 1574239 || | |||||||| || ||| |||||| || ||||| ||||| || Sbjct 835440 GAGAAGATCATCGAGCCCATCC--AGTCGCGATGTGCCATGCTGCGATT 835394 >seq5267 Length=4296760 Score = 147 bits (162), Expect = 3e-29 Identities = 175/235 (74%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 869631 CCGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTT 869690 ||||||| | |||||| ||||||||||||||||| || ||| | |||| | | | Sbjct 669047 CCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGAGCCTCCGTGATCT 669106 Query 869691 GGACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGA 869750 | ||||||| |||| || || ||||||||||| |||||||| ||| |||||||| Sbjct 669107 GCACCTCCTGGCTGAAGCGCTCGACCAGGTTCTCGTTAACGATGCCATCGGAGGCGGCGA 669166 Query 869751 AAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGT-GG 869809 | || ||||| |||||| ||| ||||||||||||||||| | || ||||| || Sbjct 669167 AGAAGGCCAGCACGTGCGAGATGAAGTGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCGG 669226 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 | | ||| | ||| ||||||||||| ||||||||| |||||||| |||| Sbjct 669227 TCAG-GTCCTTGGAGAGATCCACCTCCTCCACGGTCCAGAAAGAGGCCTCAGCCT 669280 Score = 145 bits (160), Expect = 9e-29 Identities = 146/190 (77%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||| ||||||||| | |||||| || ||| | | || || ||| || Sbjct 842774 AGAAGCGCACCGATGACATCTCGTCCTGGGACGCAGACTTTCTCAAGGTGGACCAGGGCA 842715 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| || ||| |||||||||| || ||||| || ||||| || ||||| || | Sbjct 842714 CCCTGTTCGAGCTGATCCTCGCTGCGAACTATCTGAACATCCAGGGCCTGCTGGACGTCA 842655 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 |||||| | ||||||||||||||||||||||||||||| |||| |||||| | |||| Sbjct 842654 CCTGCAAGACGGTGGCCAACATGATCAAGGGCAAGTCGCCGCAGGACATCCGCGACACCT 842595 Query 1592286 TTAACATCAA 1592295 | |||||| Sbjct 842594 TCGCCATCAA 842585 Score = 120 bits (132), Expect = 4e-21 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 868699 GTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCAT 868758 |||||||||||| | |||||| |||||||||||||| || |||||||||| |||||| Sbjct 668460 GTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCAT 668519 Query 868759 CCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCGAGCAGGCG 868818 | ||| ||||| || |||||| ||| | || ||| | | ||||| || Sbjct 668520 GAAGTTGAAGGGGTTCTTGGTATTGTAGATCTTGCCAACGCCCAGCTCCACCAGCAGACG 668579 Query 868819 GTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATGAGCGCCAC 868878 || || || || ||||||||||| |||||||| || |||||||||||||| || Sbjct 668580 ATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATGCCGATGAGGTTTAC 668639 Query 868879 CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATGATCT 868934 |||| | ||| | | ||||| | ||| || | || || ||| |||||||| Sbjct 668640 GGGCAAGGCATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATCGCGGATGATCT 668695 Score = 116 bits (128), Expect = 5e-20 Identities = 189/272 (69%), Gaps = 9/272 (3%) Strand=Plus/Plus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 || |||||||| ||| | |||||| |||| || || ||||| || ||||||||| Sbjct 668767 CCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGACCGCGCTTC 668826 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| || |||| | ||| ||||| ||| |||||||||||||||||||||||| Sbjct 668827 TTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCGACGGCGGCAAAG 668886 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTT---GTTGATCCACTTCATCGCC 869356 | |||| ||||| | ||| | | || |||| | |||||| | ||| Sbjct 668887 GCAATGATGCGCTCCCCGAAGTT------GGCCGCCTTGGAGGAGATCCAGGAAAGGGCC 668940 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTTT 869416 ||||| ||||| | |||| | |||| || ||||||||| || |||| || Sbjct 668941 CAGTCCGCCTTGCGCTTCACAGCGGGCATTGTCTCGATGGCGTTGAACAGGTATTCGCGC 669000 Query 869417 TCGGCCGGGTCCTTGACATAGGTGTCGATCAG 869448 | | ||| ||| || |||||||||||||| Sbjct 669001 TGGTGCGGATCCCGGATGTAGGTGTCGATCAG 669032 >seq5396 Length=9561034 Score = 113 bits (124), Expect = 6e-19 Identities = 142/195 (73%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 1628406 CGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTCACACGT 1628465 |||||| | || ||||| || ||| || | | |||| ||||||||| || | Sbjct 8234961 CGGACACATTAGTGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTAT 8235020 Query 1628466 CCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTTTTTGAG 1628525 |||||| ||||| || || ||||| || || ||||||||||||||| |||||| || || Sbjct 8235021 CCACAGGGCGTAGAACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTAAG 8235080 Query 1628526 GTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGCGCCCTT 1628585 || || | || | | ||| | |||||| ||||||||||| ||||||||| || Sbjct 8235081 TTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGG 8235140 Query 1628586 GCGCTTGCCGCCGCC 1628600 ||||||||||| || Sbjct 8235141 ACGCTTGCCGCCTCC 8235155 Score = 96.9 bits (106), Expect = 4e-14 Identities = 183/266 (69%), Gaps = 4/266 (2%) Strand=Plus/Plus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| ||||| ||||||||| | ||| ||||| | | |||||| || ||||| ||||| Sbjct 8235156 CTGATCGACATAGCGCGCCACATTGTTGAAGACCCTCAACATGGGAACCAGGCCATTGGA 8235215 Query 1630125 CTCGCCGTTGGTGCCCGCCA--CGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAG 1630182 |||||| ||||| || | || ||| ||| || || | || || || Sbjct 8235216 AGTGCCGTTCGTGCC-GCAAATCG-AGGTGCCCTTTGCTCGGATGCAATGGACGTTAAGT 8235273 Query 1630183 CCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCC 1630242 || ||||||||||||||||| ||||| | |||||||| | | | | | |||||| Sbjct 8235274 CCAATGCCGCCGGCCGACTTCGAGATCATGGCGCACTGCTCCACGGACTTAAAAATGCCC 8235333 Query 1630243 TCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTG 1630302 ||||| |||||||| ||||| || ||| || || ||||| |||||| | ||| Sbjct 8235334 TCGATGGAGTCGGCTGTCATGGTCAAGAGGAAACAAGACGACAGCTGCGGGCGATTTGTG 8235393 Query 1630303 CCGGCGTTGAAGAGCGTGGGCGTCGC 1630328 | ||| || ||||| |||| ||| Sbjct 8235394 GCAGCGGCAAAAAGCGTTGGCGACGC 8235419 >seq4734 Length=6139107 Score = 98.7 bits (108), Expect = 1e-14 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 1592156 GAGCAGCCCACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTG 1592215 || ||| ||| ||||| ||| | ||||| || ||||||||| | || |||| | |||| Sbjct 3782485 GACCAGGGCACTCTCTTCGAGCTCATCCTGGCGGCCAACTACTTGGATATCAGGAATCTG 3782426 Query 1592216 CTCGATCTTGGGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATC 1592275 ||| || | |||| | | |||||||| |||||||||||| | || | ||||||||| Sbjct 3782425 CTCAATGCCGCCTGCATGACGGTGGCCAATATGATCAAGGGCCACACGGCGGAGGAGATC 3782366 Query 1592276 CGCAAGACCTTTAACAT 1592292 ||| ||||||| |||| Sbjct 3782365 CGCCAGACCTTCCACAT 3782349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106685956755791