Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq5396 307 1e-78 seq5402 122 8e-23 seq5395 116 3e-21 seq5238 109 5e-19 >seq5396 Length=9561034 Score = 307 bits (340), Expect = 1e-78 Identities = 1143/1780 (64%), Gaps = 31/1780 (2%) Strand=Plus/Plus Query 138154 TTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATTCCC 138213 ||||| || || |||| ||||| | || ||||| || || | ||| || |||||||| Sbjct 8233759 TTATCCACGGTGAACTGAATGGCGTTTGCAGCTGGCTTTGTGCGCAGGTAGTACATTCCA 8233818 Query 138214 GTTTTTAACCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGTCGGT 138273 ||||| | ||| || ||||| || | |||||| || |||||| | || | || Sbjct 8233819 GTTTTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTGGC 8233878 Query 138274 TTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAATGGCC 138333 | |||| | ||||| ||||| ||||||||||| ||||| || |||||||| |||| Sbjct 8233879 TCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGGCC 8233938 Query 138334 ATGTTAAT--TAAATTTTTACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAATAT 138391 || ||||| | | || || | || |||||||| || ||||| ||||| || | | Sbjct 8233939 ATCTTAATGGTCGA-CTTCAC-TGAGATTTCCCACACTGTTTTGTACAGATCGCGGACCT 8233996 Query 138392 GTCGCGGTATTGTTGCAATATTTTGAAT---GCTCCCGTTGGCCGCAATGATGCGATTTC 138448 | || || | ||||||| || || || || | || | |||||| | || Sbjct 8233997 TCTGGGGGATGGCCTCAATATTCTGGATTGAGCCCCTGCTG---GAAATGATTTGGTTCT 8234053 Query 138449 TCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGA 138508 ||||||| |||| ||| | || || | | ||| ||| || || ||| | | Sbjct 8234054 TCATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCA 8234113 Query 138509 CCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACG 138568 | || ||||| || | || ||||| | ||||| || | ||| | ||||| || | Sbjct 8234114 CTTGGAATTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAAG 8234173 Query 138569 ATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAG 138628 |||||||||| |||| ||| || || |||| ||| || ||||| ||| ||||| || | Sbjct 8234174 ATTCGTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGG 8234233 Query 138629 AATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGACCAGTCCCACAAATCGC 138688 | ||||| | |||||| ||||||| ||||| || | ||||||||| | | Sbjct 8234234 AGTTCCGGACACCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTTG 8234293 Query 138689 TAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTTCGT 138748 | || ||||| |||||| |||||||| | || || || ||||||| || || | Sbjct 8234294 TCGGCACTTTGTCCCACATGTCGTACTGCAGAATGCCTTTGCTCACGGGACTTCCCTCAT 8234353 Query 138749 ACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCATAGT 138808 | | || ||| || || |||| || || || || || || || |||| Sbjct 8234354 AGGTTTCATATGGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCGTAGT 8234413 Query 138809 AAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCATGC 138868 | || |||||| ||||||||||| | | | ||| || | || || || || | | Sbjct 8234414 AGATGGTTTCGAATATCTGCTGATTCAAGAGACCGGCTTCTTCACTTTCATAGGGGAAAC 8234473 Query 138869 GGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGCGCA 138928 | | | | | ||||| || | || || || || | || || || ||||| | || Sbjct 8234474 GCATAAGAATTAGGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCA 8234533 Query 138929 GATTTGACGCTTTTGCGGCTTCGATAGGATAATAGTTTACATCGATGATTTTGTTTAAAT 138988 || || ||||| || | || || |||||| ||||||||| ||||| | || Sbjct 8234534 AGTTGGATTTCTTTGCCTCTGGCAGGGGGTAGAAGTTTATATCGATGATCTTGTTAAGAT 8234593 Query 138989 --TTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCAAAATCGTATGTGCCCCCGTT 139046 || | | ||| ||| || | ||| | | | ||||||||||| || Sbjct 8234594 TCTTGGTA--ACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGT------CTT 8234645 Query 139047 GTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACACCGCCAC 139106 ||| | || ||| || |||||| || || || | |||||| || || | Sbjct 8234646 CTCG-----GGAGT-GACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAAT 8234699 Query 139107 TTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTGATCGTACC 139166 ||||| || | ||| || || ||||| | ||||| || || |||||||| || || Sbjct 8234700 CTCGTCCGGAGAGGAGTACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCC 8234759 Query 139167 TAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATACGGTGTGCC 139226 | ||| || || ||||| || | ||| || ||||| || | ||||| || || | || Sbjct 8234760 GACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCC 8234819 Query 139227 AGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAGCTTGTATTTGACGCAC 139286 |||||| || |||| ||| |||||| ||||| ||| | | || Sbjct 8234820 AGTTTCGACCTGTGCCTCAATAATGGCGAACCACAAGGATTGAGCCTTAACCGTTCGGTT 8234879 Query 139287 GTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCACCGTAGGCGTC 139346 | | | | || |||| ||||| || || | | |||||| || || | | || Sbjct 8234880 GGCACGACCCTCTTGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATC 8234939 Query 139347 AGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTCGCCTTGACGCG 139406 ||| | | || || | |||||||| || ||||| | || || |||| |||||| Sbjct 8234940 GTGAAGGCCAGGGCATTTATGCGGACACATTAGTGACCAATCTCCATTGGCCTCGACGCG 8234999 Query 139407 CCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCCTTCTTATCTTC 139466 | |||| || ||||| || ||||||| ||| | | || |||||| || || || || Sbjct 8235000 CTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGATTCTCCTC 8235059 Query 139467 CGAACCCATGTTACGTTTCATGTT-AAGGAAATCAAAAACGTCAGCGTGCCATGGTTCCA 139525 | || |||| | | | | ||| ||||| ||||| ||||| | |||||| || |||| Sbjct 8235060 CTTGCCGGTGTT-CTTCTTAAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCA 8235118 Query 139526 GATAGATGGCCATTGCGCCTTTCCGTTTGCCACCT---TGATCGACGTGTCGTACAGCAT 139582 | || ||||| | || || || ||||| ||| |||||||| | || | ||| Sbjct 8235119 GGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCGACATAGCGCGCCACAT 8235178 Query 139583 TATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTGCTACGGATGG 139642 | ||||| || | |||||| || |||| || | | || ||||| |||| | || | Sbjct 8235179 TGTTGAAGACCCTCAACATGGGAACCAGGCCATTGGAAGTGCCGTTCGTGCCGCAAATCG 8235238 Query 139643 GACTGTTGCGAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGCCAAATTTGGATA 139702 || ||||||| | ||| || || | || || |||||| | | || || | Sbjct 8235239 AGGTGCCCTTTGCTCGGATGCAATGGACGTTAAGTCCAATGCCGCCGGCCGACTTCGAGA 8235298 Query 139703 TTAAAACGCAATCGCGTAATGTCTCGTATATACCTCTTATGCTGTCGTCCTGCATCGTGA 139762 | | |||| | | | || | || || ||| |||| | ||| || | Sbjct 8235299 TCATGGCGCACTGCTCCACGGACTTAAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCA 8235358 Query 139763 CCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAACAGAGTAGGACTCG 139822 || || || ||||| || ||||| | || ||| | || ||||| || || || || Sbjct 8235359 AGAGGAAACAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGCGTTGGCGACG 8235418 Query 139823 CGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCGCTCACAATATCCC 139882 | || ||||| | | | ||||| | | || ||||| | ||| | |||||| Sbjct 8235419 CATGAGTGAAGTATCGCTCCGACAAGAGGTTATAAGTTTCCACGGCTGCATCTATATCCT 8235478 Query 139883 TTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTG 139922 ||| ||||| |||| | || ||||||| ||||||||| Sbjct 8235479 CTCCATGGATTCCGATCGCCACGCGCATCAACATATGTTG 8235518 Score = 141 bits (156), Expect = 8e-29 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| |||| || || || || || || || ||||| || || ||| | | Sbjct 8330850 GATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACGCTTGAGGTCGAACCTTC 8330909 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | |||| || ||| ||||| || |||||||||||||| ||||| ||||| Sbjct 8330910 GGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCA 8330969 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| || || || |||||||| ||| | | | | || || ||||| Sbjct 8330970 GCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAA 8331029 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| || || | ||||||||| |||| |||| || || Sbjct 8331030 CATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 8331077 >seq5402 Length=10656099 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || || | || ||||| || ||||| | || || || || || Sbjct 571865 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATTACCTTGGAGGTGGAGCCCTCC 571806 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 571805 GACACGATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 571746 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || || |||||||| | | | |||| || || ||| Sbjct 571745 CAGCGTCTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTGTCCGACTACAAC 571686 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| ||||| || |||||||| | || ||||||| || Sbjct 571685 ATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGCGGTGG 571639 Score = 104 bits (114), Expect = 2e-17 Identities = 165/231 (71%), Gaps = 8/231 (3%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCA-C 24762 |||||||||||| | || || | ||||| || || || || || || || | ||||| | Sbjct 571637 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTGGAGGT-GGAGCCATC 571579 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || |||||||| ||||| || ||||| || || ||||| Sbjct 571578 TGACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCA 571519 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACA---TGTCAGATTA 24879 || ||| ||||||| ||||| || ||||| ||||| || || || | || ||||| Sbjct 571518 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGA--CG-GACGCACTCTTTCTGATTA 571462 Query 24880 TAACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| | || ||||| | || |||| || || Sbjct 571461 CAACATCCAGAAGGAGTCGACCTTGCATTTGGTTCTCCGTCTGCGAGGTGG 571411 >seq5395 Length=2659632 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || || || Sbjct 975757 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 975698 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || |||||||| ||||| || ||||| || || || || Sbjct 975697 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 975638 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | | |||| || || ||| Sbjct 975637 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 975578 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || || ||||| || || || ||||||||| | || |||| || |||| Sbjct 975577 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGCG 975529 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || || || || || || || || || || || Sbjct 975985 ATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 975926 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || ||||| || || || || Sbjct 975925 GACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 975866 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| ||||||| ||||| || ||||||||||| | | | |||| ||||| ||| Sbjct 975865 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTACAAC 975806 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| || || || ||||||||| | || | || || ||| Sbjct 975805 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTCCGTGGTGGC 975758 >seq5238 Length=3592495 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24701 ACGATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCC 24760 || ||||| ||||| | ||||| || ||||| || || || || | || || || | Sbjct 2679231 ACCATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCT 2679290 Query 24761 ACCGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGAT 24820 | ||||| | || | || || |||||||| ||||| || || || || || ||| Sbjct 2679291 TCGGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGAT 2679350 Query 24821 CAACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTAT 24880 || || ||| ||||||| ||||| || ||||||||||| | | | |||| || || Sbjct 2679351 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCCGACTAC 2679410 Query 24881 AACATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| || ||||| ||||| || ||| ||||| | || | ||||| || Sbjct 2679411 AACATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTACGCGGTGG 2679460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449866540194440