Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4493 84.2 4e-11 >seq4493 Length=3184771 Score = 84.2 bits (92), Expect = 4e-11 Identities = 181/268 (68%), Gaps = 2/268 (1%) Strand=Plus/Minus Query 183043 CAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTACTGGGCTAAAAAGATA 183102 ||| || || | || || || ||||| | ||| | || ||||||||||| || ||||| Sbjct 604540 CAGCTGGTGCGCGAGGGCAAGATGCACGGCTTTCTGCGCATGTACTGGGCCAAGAAGATT 604481 Query 183103 CTTGAATGGACAAGAACTCCGGAAGATGCTTTGAGTTATAGTATCTATATGAACAATAAG 183162 || || ||||| || || || || || || ||| ||| | ||| | ||| Sbjct 604480 CTCGAGTGGACCGCCACCCCTGAGGAGGCGCTGGAATATGCGATCCTGCTAAACGACAAG 604421 Query 183163 TACGAACTAGACGGTACG-GATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGG 183221 ||| || ||||| ||| ||||| ||||| || || || || |||||||| ||| | || Sbjct 604420 TACAGCCTCGACGG-ACGCGATCCCAACGGCTATGTCGGCTGCATGTGGTCCATTGGGGG 604362 Query 183222 ATTACACGATAGAGCGTGGAAAGAAAGACCTATATTTGGAAAGATAAGATATATGAATTA 183281 | | ||||| | | ||||| || | | || || || ||| | |||||||||| || Sbjct 604361 AGTCCACGACATGGGCTGGAAGGAGCGGGCCATCTTCGGCAAGGTGCGATATATGAACTA 604302 Query 183282 TGAGAGTTCTAAGAAGAAATTTGATGTT 183309 || | | ||| || || |||||| Sbjct 604301 CCAGGGGTGCAAGCGAAAGTTCGATGTT 604274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903348830749280