Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq5238 93.3 1e-13 seq5402 84.2 5e-11 seq5396 84.2 5e-11 seq5395 84.2 5e-11 >seq5238 Length=3592495 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || || || ||||| ||||| ||||| ||| ||||| |||| Sbjct 2679249 AAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCGGACACCATCGAGAAT 2679308 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || || || || || || | || |||||| Sbjct 2679309 GTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAGCAGCGTCTGATCTTC 2679368 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| || || | || || |||| |||||| ||||||| ||||| Sbjct 2679369 GCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCG 2679428 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 2679429 ACCCTCCACCTGGT 2679442 >seq5402 Length=10656099 Score = 84.2 bits (92), Expect = 5e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| || | || || || || ||||| |||| ||||| |||||| Sbjct 571634 CAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCATCTGAC 571575 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| || || || || |||||| || || || Sbjct 571574 ACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAGCAG 571515 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| | || || ||| | ||| | | ||||||||| || Sbjct 571514 CGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTTTCTGATTACAACATC 571455 Query 206353 CAGAAAGAGTCTAC 206366 ||||| ||||| || Sbjct 571454 CAGAAGGAGTCGAC 571441 >seq5396 Length=9561034 Score = 84.2 bits (92), Expect = 5e-11 Identities = 134/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| | || || ||| ||| || || ||||| Sbjct 8330866 AAGACCCTCACGGGCAAGACCATCACGCTTGAGGTCGAACCTTCGGATACTATCGAAAAT 8330925 Query 206245 GT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 || ||||| || |||||| || |||||||||||| || || || | || ||||| Sbjct 8330926 GTCAAAGCCAA-GATTCAGGACAAAGAAGGAATTCCTCCAGATCAGCAGCGTCTGATCTT 8330984 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 ||| || |||||| |||||||||| | || | | || || ||| | ||||| ||||| Sbjct 8330985 CGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAACATTCAGAAGGAGTC 8331044 Query 206364 TACTCTTCAC 206373 ||| | ||| Sbjct 8331045 CACTTTGCAC 8331054 >seq5395 Length=2659632 Score = 84.2 bits (92), Expect = 5e-11 Identities = 132/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || || || || || || ||||| | || || || || ||||| |||| Sbjct 975970 AAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCCGACACCATCGAGAAT 975911 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || || ||||| || ||| || | || |||||| Sbjct 975910 GTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAGCAGCGTCTGATCTTC 975851 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 |||||||||||| |||| || ||| | || || ||||||||||| ||||||| ||||| Sbjct 975850 GCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTACAACATCCAGAAGGAGTCC 975791 Query 206365 ACTCTTCAC 206373 || || ||| Sbjct 975790 ACCCTCCAC 975782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181737170297683