Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq5396 347 1e-90 seq5170 158 1e-33 seq5402 89.7 5e-13 seq5395 87.8 2e-12 >seq5396 Length=9561034 Score = 347 bits (384), Expect = 1e-90 Identities = 1200/1844 (65%), Gaps = 36/1844 (2%) Strand=Plus/Plus Query 146572 GCCGCAGGTTTTGTGCGCAAATAATACATGCCCGTTTTGAGGCCACATCGCCACGAGTGA 146631 || || || |||||||||| || ||||| || |||||||| ||| | ||| || | Sbjct 8233786 GCAGCTGGCTTTGTGCGCAGGTAGTACATTCCAGTTTTGAGACCAGCTTTCCAGGAATAG 8233845 Query 146632 TTGTGAATCGAAGTCATGATGGCGTACGTCGGCTCCGCCACGAAAAGATTAAACGATTGG 146691 ||| || || || | | | || | ||||| ||||| || || ||||| || Sbjct 8233846 AAGTGTATGGACGTGAGTTTTCCATAGTTTGGCTCTGCCACATGAATGTTGAACGACTGA 8233905 Query 146692 CTTTGATCTATGAAAGCGTTGCGGTCGGCCGCCATCTCAATCATGCGTTTTGTCTTC-AT 146750 || ||||||||||| || || || || ||||||| ||| | || || || || Sbjct 8233906 CTCTGATCTATGAACGCTCCTCGATCTGCGGCCATCTTAATGGT-CGACTTCACTGAGAT 8233964 Query 146751 TTCCCAAGCGGTTTTGTACAGCCCCTTAACGCTATCTGGAATACCTTCAATGTTTTGAAT 146810 |||||| | ||||||||||| | || | | || || | ||||| || || || Sbjct 8233965 TTCCCACACTGTTTTGTACAGATCGCGGACCTTCTGGGGGATGGCCTCAATATTCTGGAT 8234024 Query 146811 AGAGCCCTTGTGCGCAAAAATAGTGTTTCGT-ATTTCGGGCGTGTAA-AGGTTTAGTTTA 146868 |||||| || | || || || ||| | || ||| ||| | | || || | Sbjct 8234025 TGAGCCCCTGCTGGAAATGATT-TGGTTCTTCATGTCGT-CGTCCCACAAGTCCAGCTCC 8234082 Query 146869 ATGAGGTCATCAATTAAATACTGATTGACCACTTGAAACTCGCCCGCCAGCACACGTCTG 146928 | ||||| | |||| || || |||||||| || ||||| | ||| || || ||| Sbjct 8234083 GTTAGGTCCCTTAACAAATGATGGTTAACCACTTGGAATTCGCCAGACAGAACTCGCCTG 8234142 Query 146929 AGATACACATTGCTAGTGAAAGGCTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTG 146988 ||| | ||| | ||| | ||||| ||||| || || ||||| | |||||||| ||| Sbjct 8234143 GTATAAATATTCGTTGTGTACGGCTCGAAAGATTCGTTGTTGCCCATAATTTGGGCAGTG 8234202 Query 146989 GTTGCGGTAGGCATGTACGCCACCAACAATGAATTTCGCAGACCGTACGCACGGATGTTG 147048 | || || ||||| ||| ||||||| || || || | ||||| | |||| Sbjct 8234203 GACGCAGTGGGCATAGGCGCAACCAACAGGGAGTTCCGGACACCGTGCTGCTTGATGGAC 8234262 Query 147049 TCCTTCAAAGTTTGCCAGTCCCACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGG 147108 ||||||| | ||||||||||| | | ||| || ||||||||||||||| Sbjct 8234263 TCCTTCAGTTTCTGCCAGTCCCAAAGGTTTGTCGGCACTTTGTCCCACATGTCGTACTGC 8234322 Query 147109 AGCACTCCTCGACTGGCGGGACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCC 147168 || | ||| || ||||||| || | | || || |||||| ||| ||| Sbjct 8234323 AGAATGCCTTTGCTCACGGGACTTCCCTCATAGGTTTCATATGGGCCGTCGATCTGGGCC 8234382 Query 147169 AATTCACAGCTTGCCTCGAGCGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGG 147228 | |||||| || || || || || || ||||| ||||||||| || || | || | | Sbjct 8234383 AGTTCACAACTGGCTTCCAGGGCGCCGTAGTAGATGGTTTCGAATATCTGCTGATTCAAG 8234442 Query 147229 ACGGTCGCTTCTTCGCTCTCGTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCC 147288 | |||||||| || || || || | ||||| ||| | | ||| || || || ||| Sbjct 8234443 AGACCGGCTTCTTCACTTTCATAGGGGAAACGCATAAGAATTAGGGCGTCAGCGAATCCC 8234502 Query 147289 TGGATACCGACGCCGATAGGTCGATGCTTTTCGTTGCTGCGCTTCGCGCTC-GCTATGGG 147347 |||| ||||| ||| | || |||||| | |||| ||| || ||| | | ||| Sbjct 8234503 TGGACACCGATGCCCACGGGACGATGCCTCAAGTTGGATTTCTTTGC-CTCTGGCAGGGG 8234561 Query 147348 ATAGTGGTTGCGATCAATAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTT 147407 ||| ||| ||| || |||||||| || || || || || | | || Sbjct 8234562 GTAGAAGTTTATATCGATGATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACTTCCTT 8234621 Query 147408 GAGTTTCTCGAAATCATAAGTCCCGTCTTCGACACGTACGCATTGGTTCACGGCGATAGA 147467 ||||||| |||||| || ||| | ||| | ||| | ||| | |||||| || Sbjct 8234622 AAGTTTCTTGAAATCGTATGTC---TTCTCGGGAGTGACGAACATGTTGAGGGCGATGGA 8234678 Query 147468 CGCCAGATTGCAGACGGCCGTCTCTTCGGCGTCGCTGTACTGCACGATTTCGGCGCACAG 147527 |||| |||||||| || |||| || | | ||||| ||||||||| | ||||| Sbjct 8234679 TGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAGTACTCCACGATTTCTGTGCACAA 8234738 Query 147528 GTTGCTGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTT 147587 ||||||||| || ||| || | ||| ||||| ||||| |||| ||||| || || || Sbjct 8234739 GTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCCTT 8234798 Query 147588 GAAGAGCATGTACGGTCCGCCGGTCTCGACTTGCGTTTCAACGAT---AAACCTATGCAG 147644 || |||||||| || || || ||||| || | |||| || |||| || Sbjct 8234799 AAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAATGGCGAACC---ACAA 8234855 Query 147645 GTCCTGCGCTCGCACCCGCTGCCGATAG--CGGCCCTCGTTTTCGTACCGCTCGTACAAC 147702 | || || | | ||| | | | | | || ||||| | || ||| ||| |||||| Sbjct 8234856 GGATTGAGC-CTTAACCG-TTCGGTTGGCACGACCCTCTTGCTCATACTTCTCATACAAC 8234913 Query 147703 CGCTCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGC 147762 || || || ||||| | |||| |||||| || || | |||||||||||| || Sbjct 8234914 TTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGGCATTTATGCGGACACATTAGT 8234973 Query 147763 GACCACATGT-CGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTA 147821 ||||| || | | | || | ||||| |||||| ||||| || | |||||| ||||| Sbjct 8234974 GACCA-ATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTA 8235032 Query 147822 CATAAGATCGC--GCGCTTTGCAATCCTCGGCGCCCATGTTGCGTTTCAAATT--AAGCA 147877 | ||||||| |||| | | ||||| ||| |||| | | | || || | | | Sbjct 8235033 GAACAGATCGCGGGCGCGATTC--TCCTCCTTGCCGGTGTT-CTTCTTAAGTTCCAGGAA 8235089 Query 147878 CGCTATAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTTC 147937 | | | ||| ||| | ||||||||| || | ||| | ||| | ||||| |||||| | Sbjct 8235090 CTC-AAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGC 8235148 Query 147938 CG---CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGC 147994 || ||||| ||||||| |||| ||| ||||| || || | || |||||| |||||| Sbjct 8235149 CGCCTCCCTGATCGACATAGCGCGCCACATTGTTGAAGACCCTCAACATGGGAACCAGGC 8235208 Query 147995 CGCTCGCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGT 148054 | | | ||||||||| ||| ||| | |||| ||||| | || |||| Sbjct 8235209 CATTGGAAGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTTGCTCGGATGCAATGGACGT 8235268 Query 148055 TAACGCCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGA 148114 ||| |||||||||||| | |||| || || ||||| | ||| | | | | | Sbjct 8235269 TAAGTCCAATGCCGCCGGCCGACTTCGAGATCATGGCGCACTGCTCCACGGACTTAAAAA 8235328 Query 148115 TGCCGTCGATGCTGTCGTTTTTGA-CGCCAAGCAAAAAACACGAACACATTTGCGGAATC 148173 |||| |||||| |||| | | | | |||| | ||||| || ||| ||||| Sbjct 8235329 TGCCCTCGATGGAGTCGGCTGTCATGGTCAAG-AGGAAACAAGACGACAGCTGCGGGCGA 8235387 Query 148174 CGCGTTCCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATG 148233 || | || | ||||| || || ||| || || || || | || | | Sbjct 8235388 TTTGTGGCAGCGGCAAAAAGCGTTGGCGACGCATGAGTGAAGTATCGCTCCGACAAGAGG 8235447 Query 148234 CGATACGTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATG 148293 ||| || || | || | || || || || || || || || | ||| |||||||| Sbjct 8235448 TTATAAGTTTCCACGGCTGCATCTATATCCTCTCCATGGATTCCGATCGCCACGCGCATC 8235507 Query 148294 AGCATGTGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTGAGAAGATATCCATTTTCG 148353 | ||| || || || || || || | || ||| |||| || ||||| | |||| Sbjct 8235508 AACATATGTTGCGGACGCTCAGCGATTTTTCCGTTTCTCTTCAGCAGATAGGAACGTTCG 8235567 Query 148354 AGGGTTTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTA 148397 ||||| ||| | ||||| || || || |||| || | ||||| Sbjct 8235568 AGGGTCTTGAACCCAAAATAGTTATACCCAAAGTCGCGGTCGTA 8235611 Score = 98.7 bits (108), Expect = 9e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| |||| ||||| || | | ||||| || |||||||| ||||| | ||| Sbjct 8331072 ACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 8331013 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || |||||| ||||| || || | |||| |||||||| ||||||||||| || || Sbjct 8331012 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 8330953 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 |||||| || ||| || ||| | | ||| | |||||| | || || || || | Sbjct 8330952 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAG 8330893 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||| | || || || || || || || | ||| |||||||| Sbjct 8330892 CGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 8330851 >seq5170 Length=6624210 Score = 158 bits (174), Expect = 1e-33 Identities = 238/338 (70%), Gaps = 3/338 (1%) Strand=Plus/Minus Query 51541 CAATACCGATGATGCCGCAGCCGAGACGTCCGCCCGAGTTGCCCGTGGTCTTGCTCAGCG 51600 |||| ||||||| ||||||||| | || | || | ||| ||||||| |||||||||| Sbjct 512640 CAATGCCGATGACGCCGCAGCCAATGCGGGCACCTGCGTTTCCCGTGGACTTGCTCAGCT 512581 Query 51601 GATGGTCGGTGAGGCCGAGATCGTCGCGCTTTGCGTGAACCACCAGACTGCGGCCAACGA 51660 ||| | |||||||||| ||| | ||||| ||||| | |||| || | || Sbjct 512580 CGTGGCCACCCTGGCCGAGATCATCGGCATCGGCGTGGACCACAACGGTGCGCCCGATGA 512521 Query 51661 CGCTATTTTCGCCGAAAAGCGTCATCACGTTGTCGATCTTGTCCACTTCGGTGAGGGCGT 51720 ||| | ||||||| ||||| ||| |||| | ||| || | |||| | || Sbjct 512520 TGCTGTCGGCGCCGAACAGCGTGATCTTCGAGTCGGTGATGTTGACCTTGGTGGGACAGT 512461 Query 51721 TGGACACTTTAGCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAG 51780 | | | ||||||| ||||||| ||| || | ||| || || | || |||| Sbjct 512460 CGC---CGGTGGCCTCGATGTTGCCCAGGTCTCCCAGGTGACGGTTCTCGTCGGCGGGAG 512404 Query 51781 CGCCGTGGTCGCTGCCGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGG 51840 | ||||| || ||||| ||| |||||||| || | |||| ||||||||||| || Sbjct 512403 CTCCGTGCTCCTTGCCGTAGGGATTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGT 512344 Query 51841 TGTCGCCGAATTCGTGCACGTGGAATCCGTGCAGGCCC 51878 |||| ||||| ||||| ||||||||||||||||||||| Sbjct 512343 TGTCCCCGAACTCGTGTACGTGGAATCCGTGCAGGCCC 512306 >seq5402 Length=10656099 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 ||||| || | | | ||||| || || |||||||||||| || |||||| || || Sbjct 571657 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTCCTCC 571716 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 || || || |||| |||| |||||||| |||||||| || ||||| || || || Sbjct 571717 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 571776 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || |||| | || | || |||| |||||||| || | || | || ||| Sbjct 571777 ATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACCTCCAAGGTAATGGTCTTA 571836 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||| || || | || |||||||| Sbjct 571837 CCAGTCAAGGTCTTCACAAAGATCTGCAT 571865 >seq5395 Length=2659632 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| || | ||||| || | | | ||||| || || |||||||||||| || ||| Sbjct 975536 ACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGT 975595 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || ||||| || |||| |||| |||||||| || ||||| || || || Sbjct 975596 GCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCC 975655 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 || || || || || |||| | || | ||||||| ||||| || || | Sbjct 975656 CTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAG 975715 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | || || |||||||| || || | ||| ||||||||| Sbjct 975716 GGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 975758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476578295954280