Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq5396 120 3e-22 >seq5396 Length=9561034 Score = 120 bits (132), Expect = 3e-22 Identities = 464/719 (65%), Gaps = 25/719 (3%) Strand=Plus/Plus Query 136638 CACGGTGAATTGGATTGTATTCGCGGCAGGTTTAGTTCTCAGATAGTACATGCCCGTCTT 136697 ||||||||| || || | || || || || || || | ||| |||||||| || || || Sbjct 8233764 CACGGTGAACTGAATGGCGTTTGCAGCTGGCTTTGTGCGCAGGTAGTACATTCCAGTTTT 8233823 Query 136698 TAAACCCTTCTCCCAGGAATAATTATGTATAGATGACAAAATTTTATAGCTCGGATCGGC 136757 | ||| | ||||||||| ||||| || | | || |||| | || || || Sbjct 8233824 GAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTGGCTCTGC 8233883 Query 136758 CACGAAAAGATTTAGCGATTGGCTCTGATCGATGTAAGGTCCGCGGTCTGCGGCCATGTT 136817 ||| || || | ||| || |||||||| ||| | | ||| || ||||||||||| || Sbjct 8233884 CACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGGCCATCTT 8233943 Query 136818 CAATAGTACTTTTTGCTTA-ATTTCCCAAGCGGTTTTAAAGAGCTCCTTGACATTGGGCG 136876 ||| || || || | |||||||| | ||||| | || || ||| || | | Sbjct 8233944 -AATGGTCGACTTCACTGAGATTTCCCACACTGTTTTGTACAGATCGCGGACCTTCTGGG 8234002 Query 136877 GAATTTCATCGATATTCTGTACAGATCCGTTGTTTTTGATGATTT---TCATCATGAGAT 136933 | || | || |||||||| | || || || | ||||||| || ||||| | Sbjct 8234003 GGATGGCCTCAATATTCTGGATTGAGCCCCTGCTGGAAATGATTTGGTTCTTCATGTCGT 8234062 Query 136934 CAGTCGAGTATACGTTGCTCTCTATGAGTTTATCGACGAGATGCTGATTTACTACTTGAT 136993 | ||| | | || ||| | || | | | ||| || || || ||||| Sbjct 8234063 C-GTCCC--ACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTTGGA 8234119 Query 136994 ATTCGCCCGATAGCACTCTGC--GTACGTACAGATTACTAGTGAACGGCTCGAACGATTC 137051 ||||||| || || |||| | ||| || | ||| | ||| |||||||||| ||||| Sbjct 8234120 ATTCGCCAGACAGAACTCGCCTGGTA--TAAATATTCGTTGTGTACGGCTCGAAAGATTC 8234177 Query 137052 GTTGTTACCCAAAATCTGTGCAGTCGTCGCTGTCGGCATGTAAGCGATCAACAATGAATT 137111 |||||| |||| ||| || ||||| | ||| || ||||| || | ||||| || || Sbjct 8234178 GTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGTT 8234237 Query 137112 CCGTAAACCGTGTACGGCCAATTGTTG-----CTTGAGCTCTTTCCAGTTCCACAGATTG 137166 ||| | |||||| | || ||| || ||| || | | ||||| ||| || || Sbjct 8234238 CCGGACACCGTG--CTGC---TTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTT 8234292 Query 137167 TTCGATTGGGTTATATTCCACAAATCAAACTGCAAAAGTCCGCGACTTGCAGGACTTTCT 137226 ||| | | | | ||||| || |||||| || || || | |||||| | Sbjct 8234293 GTCG---GCACTTTGTCCCACATGTCGTACTGCAGAATGCCTTTGCTCACGGGACTTCCC 8234349 Query 137227 GCATAAGAATCATATGTTCCGTGCAGTTTCGCCAGTTCAATACTCTGGACTAGTGCGCCA 137286 |||| | ||||||| |||| | | ||||||||| ||| | || ||||| Sbjct 8234350 TCATAGGTTTCATATGGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCG 8234409 Query 137287 TAGTAAATAGTTTCGGAGATTTTTCTATTCAATTCTCTAGCTTCTTGGCTGTCGTAGGG 137345 ||||| || |||||| | || | |||||| | ||||||| || || ||||| Sbjct 8234410 TAGTAGATGGTTTCGAATATCTGCTGATTCAAGAGACCGGCTTCTTCACTTTCATAGGG 8234468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445063671795360