Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq5267 228 1e-53 seq5402 116 5e-20 seq5396 109 8e-18 seq4739 102 1e-15 >seq5267 Length=4296760 Score = 228 bits (252), Expect = 1e-53 Identities = 343/484 (71%), Gaps = 10/484 (2%) Strand=Plus/Minus Query 1455796 AGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGGTCCACT 1455855 |||| |||||||| || ||||||| |||||||| || ||| | ||| | | ||| Sbjct 669280 AGGCTGAGGCCTCTTTCTGGACCGTGGAGGAGGTGGATCTCTCCAAGGACCTGACCGACT 669221 Query 1455856 GGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCGCC 1455915 || |||| |||||||||||||| |||||| |||||| || ||||| || |||| Sbjct 669220 GGCACCGCCTGAAGGACGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTT-CGCC 669162 Query 1455916 GCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAATTG 1455975 ||| |||||||||||| ||||||||||| || ||||| | | ||||| || | Sbjct 669161 GCCTCCGATGGCATCGTTAACGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTGCAGATC 669102 Query 1455976 CCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAACC 1456035 | ||||| || | || || || |||||||||||||| || ||| | ||||| || | Sbjct 669101 ACGGAGGCTCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATG 669042 Query 1456036 TACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCACCTCTTTCGC 1456095 ||| | ||||||||||||||| || ||| ||| | || || |||| || | Sbjct 669041 TACAGTGTGCTGATCGACACCTACATCCGGGATCCGCACCAGCGCGAATACCTGTTCAAC 668982 Query 1456096 GCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAGTGGAT---C 1456152 |||||||| || |||| | |||| | ||||| |||||||| | ||||| | Sbjct 668981 GCCATCGAGACAATGCCCGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATCTCC 668922 Query 1456153 AACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCG-CGTCGAGGGCA 1456211 ||||| || | |||| | ||||| || | | |||||||| ||||||||||| Sbjct 668921 TCCAAGGCGGCC-----AACTTCGGGGAGCGCATCATTGCCTTTGCCGCCGTCGAGGGCA 668867 Query 1456212 TCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCTCATGCCCG 1456271 |||| ||| ||||| ||| | |||| || ||||| ||||||||||| || ||||| | Sbjct 668866 TCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGG 668807 Query 1456272 GTCT 1456275 | || Sbjct 668806 GACT 668803 Score = 98.7 bits (108), Expect = 1e-14 Identities = 158/222 (71%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 1456521 AGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGGTGG 1456580 |||||||| ||| || || | || ||| | ||||| ||| ||| | |||| || Sbjct 668695 AGATCATCCGCGATGCTGTGGCCATAGAGCAGGAGTTCCTCACCGATGCCTTGCCCGTAA 668636 Query 1456581 CGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGACC 1456639 |||||||||||||| || ||| |||||| |||||||| ||||| || || || | Sbjct 668635 ACCTCATCGGCATGAATTGCGACC--TCATGTCGCAGTACATCGAATTC-GTGGCGGATC 668579 Query 1456640 GCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCATGG 1456699 | ||||| | || ||| ||| || ||| |||| || ||||| ||| | Sbjct 668578 GTCTGCTGGTGGAGCTGGGCGTTGGC-AAGATCTACAATACCAAGAACCCCTTCAACTTC 668520 Query 1456700 ATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAG 1456741 |||||| |||||||||| || |||||||||||||| |||||| Sbjct 668519 ATGGAGATGATCTCGCTGGACGGCAAGACCAACTTCTTCGAG 668478 >seq5402 Length=10656099 Score = 116 bits (128), Expect = 5e-20 Identities = 235/346 (68%), Gaps = 2/346 (1%) Strand=Plus/Plus Query 332873 AAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATGACCATTGACGACG-TGTTGCA 332931 || ||||| |||||||| || ||| | || |||||||| | || || | ||||||| Sbjct 835394 AATCGCAGCATGGCACATCGCGACTGGATGGGCTCGATGATC-TTCTCGCTGGTGTTGCA 835452 Query 332932 GGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGGAGGGCCTGTTG 332991 ||||| ||| || | ||| || || | | | |||||||| || | |||||| || Sbjct 835453 GGCCAAGGCGAATCTCGTGGTGCTGCTGTAGATCTCCATGGTGCGGCGCAAGGCCTGCTG 835512 Query 332992 GGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTGGCGCCCGTGCGG 333051 ||| || ||| | || ||| |||||||||||||| | |||||||| | || | || Sbjct 835513 GGCTCCCTCCGTCATGCTGTCCGCCTCGTCGAGGATCACAATCTTGTGCCTTCCACGGGG 835572 Query 333052 CAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGACGTCCACGCCGCG 333111 ||| ||| ||| | ||| ||||| | |||||||| || || | || || Sbjct 835573 CAGTGTCACCTTTTGCTGGGCAAACATCTTGATCTTGTTGCGCACCACATCGATTCCTCG 835632 Query 333112 CTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACCCAAGAGGACGCG 333171 ||| | || ||||| | ||||| || ||||| | | |||| ||||| | Sbjct 835633 CTCATTGGAGGCGTTTAACTCGAGGACAGCCTCCTTATAACTGTCTCCCAGGAGGATCCT 835692 Query 333172 CGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCC 333217 |||||||| |||| | |||||||||||| ||| || |||||| Sbjct 835693 GGCCAGGCATTGGATGGTGGTGGTCTTGCCCACGCCAGGAGGACCC 835738 >seq5396 Length=9561034 Score = 109 bits (120), Expect = 8e-18 Identities = 202/290 (70%), Gaps = 6/290 (2%) Strand=Plus/Minus Query 259896 TGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGC 259954 ||||| ||| | ||||| ||| ||| |||| ||||| ||| || | ||| ||| Sbjct 8235442 TGTCGGAGCGATACTTCAC-TCATGCGTCGCCAACGCTTTTTGCCGCTGCCACAAATCGC 8235384 Query 259955 CCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTAT 260014 |||||| ||||| || || || ||| ||||| ||||| || ||||||||||| | | Sbjct 8235383 CCGCAGCTGTCGTCTTGTTTCCTCTTGACCATGACAGCCGACTCCATCGAGGGCATTTTT 8235324 Query 260015 GACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCA 260074 | | | |||||||||| | ||||| ||| ||||||||||||| || || || Sbjct 8235323 AAGTCCGTGGAGCAGTGCGCCATGATCTCGAAGTCGGCCGGCGGCATTGGACTTAACGTC 8235264 Query 260075 CACAAGGTGCGCGCCGCGGGCGCCTACG--TGGCGGGCACCAACGGCCAGTCCAACGGCC 260132 || | || || |||| ||| || | || ||||| |||||| ||||| |||| Sbjct 8235263 CATTGCATCCGAGCAAAGGGCACCT-CGATTTGC-GGCACGAACGGCACTTCCAATGGCC 8235206 Query 260133 TTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 | || |||||| | | || || ||| | ||||||||| ||||| ||| Sbjct 8235205 TGGTTCCCATGTTGAGGGTCTTCAACAATGTGGCGCGCTATGTCGATCAG 8235156 Score = 89.7 bits (98), Expect = 7e-12 Identities = 116/159 (73%), Gaps = 6/159 (4%) Strand=Plus/Minus Query 261788 GGCGGCGGCAAGCGCAAGGGCGCCTTTGCCTGCTACCTGGAACCGTGGCACGCCGACCTC 261847 || ||||||||||| || ||||||||| |||||||| || |||||| | ||| || Sbjct 8235155 GGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTC 8235096 Query 261848 ATCAACTGGCTGGACCTCAAAAAGAACCACGGCAAGGGAGGGGGAGAACCGGGCGCGCGC 261907 | | | ||||| || || |||||| ||||| ||| |||||| | |||| ||| Sbjct 8235095 TTTGAGTTCCTGGAACTTAAGAAGAACACCGGCA----AGGAGGAGAATC--GCGCCCGC 8235042 Query 261908 GATCTCTTTTACGGCCTGTGGACGTGCGACCTGTTTATG 261946 ||||| || |||| |||||||| ||| || |||||| Sbjct 8235041 GATCTGTTCTACGCCCTGTGGATACCCGATCTCTTTATG 8235003 >seq4739 Length=5756469 Score = 102 bits (112), Expect = 1e-15 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1818069 ATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCACG 1818128 ||| | ||||| || || ||||||| ||||| || ||| | |||| ||||| Sbjct 556589 ATGTTGAAGGGGGTGACCAGCTCGGGGAAGGTCAGGTTCTGGGCGATGGAGCGCGGCACA 556648 Query 1818129 CCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGTTG 1818188 || |||| ||| || | | ||| |||||| ||||||| | || |||| ||||| Sbjct 556649 CCGACCTGGTCGATACGCAGGTTGGGATCGGGGGTGATGACAGTACGGGCGGAAAAGTCC 556708 Query 1818189 ACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCTCCACG 1818248 || || || ||||| | ||||| || |||||||||||||| ||||||| ||| || | Sbjct 556709 ACACGTTTTCCCATCAAGTTGCCACGAATCCTGCCCTCCTTACCCTTGAGACGCGCCTTG 556768 Query 1818249 AGGCCCTTGGTGGGCTTGCCCGAC 1818272 | | | || ||||||||||||| Sbjct 556769 ATGGCTTTAAGGGGCTTGCCCGAC 556792 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177278496498726