Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq5396 143 3e-29 seq5238 114 1e-20 seq5402 105 7e-18 seq5395 102 8e-17 seq5267 89.7 5e-13 >seq5396 Length=9561034 Score = 143 bits (158), Expect = 3e-29 Identities = 1110/1761 (63%), Gaps = 56/1761 (3%) Strand=Plus/Minus Query 7564 CAACACATGCTGTTGCGCGTGGCGGTGGGCATTCACGGCGAAGACATTGACGCCGCCTTG 7623 ||||| ||| || ||||||||||| | || || || || || || || || || ||| || Sbjct 8235518 CAACATATGTTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATAGATGCAGCCGTG 8235459 Query 7624 GAAACGTACCAAATGATGTCTTTGAAACAGTTTACGCACGCTTCGCCCACCATGTTTGCC 7683 ||||| || | | |||| | | | || || || || ||||| || | |||||| Sbjct 8235458 GAAACTTATAACCTCTTGTCGGAGCGATACTTCACTCATGCGTCGCCAACGCTTTTTGCC 8235399 Query 7684 GCGGGCACAAA-CGCGCCTCAATTGTCCTCGTGTTTTTTGCTAACCATGCGCGAAGACAG 7742 || | |||||| ||| || || |||| || ||||| | | |||||| | ||| Sbjct 8235398 GCTGCCACAAATCGC-CCGCAGCTGTCGTCTTGTTTCCTCTTGACCATGACAGCCGACTC 8235340 Query 7743 CATCGACGGCATTTACAACACGCTGCGCGATTGCGCCAATATTTCCAAATACGGCGGCGG 7802 |||||| ||||||| || | || | ||||||| || || || | | |||||| Sbjct 8235339 CATCGAGGGCATTTTTAAGTCCGTGGAGCAGTGCGCCATGATCTCGAAGTCGGCCGGCGG 8235280 Query 7803 AATAGGTCTGAACGTAAACGACGTGCGCGCCAACGGTAGC-CGCATCGTGTCCACCAACG 7861 || || || ||||| | | | || || || || | | || | | | ||| |||| Sbjct 8235279 CATTGGACTTAACGTCCATTGCATCCGAGCAAAGGGCACCTCGATTTGCG-GCACGAACG 8235221 Query 7862 GAAAAGCCAGCGGTTTAGAGCCCATGTTGCGCGTGTTCAATAACGCGGTGCGACATGTAG 7921 | | ||| || | | ||||||||| | || ||||| || | || ||| |||| | Sbjct 8235220 GCACTTCCAATGGCCTGGTTCCCATGTTGAGGGTCTTCAACAATGTGGCGCGCTATGTCG 8235161 Query 7922 ACCAG---GGGGGAAAGCGCAAAGGCGCCGCTGCCATCTATTTGGAGCCGTGGCACGCGG 7978 | ||| || || ||||| || ||| |||||| || ||||||| |||||| ||| Sbjct 8235160 ATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGG 8235101 Query 7979 ACATTTACGCAGTGCTAAATCTGCGTCGCAACATGGGTTGCGAAGACAGCAAAGCGCGCG 8038 || | | | | || | || |||| || || || | || |||| Sbjct 8235100 ACGTCTTTGAGTTCCTGGAACTTAAGAAGAACACCGGCAAGGAGGAGAATCGCGCCCGCG 8235041 Query 8039 ATCTATTCTTCGGATTGTGGGTGCCCGATCTGTTTATGAGGCGCGTTCATTTCGACGCAC 8098 |||| |||| || ||||| | |||||||| ||||||| |||||| | | | | | Sbjct 8235040 ATCTGTTCTACGCCCTGTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGCCAATGGAG 8234981 Query 8099 AATGGTCGCTCATGTGCCCCGATCGTTGCCCTTTATTAAAAAACGTTTACGGTTCAAAAT 8158 | ||||| || ||||| || || |||||| | | | || | || ||| Sbjct 8234980 ATTGGTCACTAATGTGTCCGCATAAATGCCCTGGCCTTCACGATGTGTGGGGCGATGAAT 8234921 Query 8159 TTGAACAATTGTACAAACAATACGAACACGACGGCGCGTACGTGCGGCA-AGTGAAAGCG 8217 | ||| | ||||| | | || || || || || ||| | | | | || || || Sbjct 8234920 TCGAAAAGTTGTATGAGAAGTATGAGCAAGA-GGGTCGTGCCAACCGAACGGTTAAGGCT 8234862 Query 8218 CGCGACCTGCACCGCGCCATTATCGAATGTCAAAACGAAACCGGTATGCCGTACATGCTG 8277 | | || ||||||||| || || |||||| || | || ||||||||| Sbjct 8234861 CAATCCTTGTGGTTCGCCATTATTGAGGCACAGGTCGAAACTGGAAACCCCTACATGCTG 8234802 Query 8278 TACAAAGACGCTTGCAACGCCAAAAGCAATCAAAGCAACGTGGGCACCATTTGTTGCAGC 8337 | || || || |||||| || ||||| || || || |||||||| |||||| Sbjct 8234801 TTTAAGGATGCCTGCAACAGGAAGAGCAACCAGCAGAATGTCGGCACCATCAAGTGCAGC 8234742 Query 8338 AATCTGTGCGCTGAAATTGTACAGTACAGCGCGCCCGACGAAGTGGCCGTTTGCAATCTA 8397 || ||||| | ||||| || ||||| | | || ||||| | || || ||||| | Sbjct 8234741 AACTTGTGCACAGAAATCGTGGAGTACTCCTCTCCGGACGAGATTGCAGTCTGCAACTTG 8234682 Query 8398 GCGTCGGTGTGTTTAAACGCGTTCGTTGATCGACGCTCAAACACTTACGACTTTGAACAA 8457 || || | | ||| |||||| | | | || || ||||| ||| || || Sbjct 8234681 GCATCCATCGCCCTCAACATGTTCGTCACT---CCCGAGAAGACATACGA-TTTCAAGAA 8234626 Query 8458 --TTGAAAAACGCCGT--GCAAGTGACGG-TAC--GCAATTTAGATCGCATCATTGATGT 8510 || || | || ||| ||||| ||| ||| | | ||||| ||| | Sbjct 8234625 ACTT----AAGGAAGTTACCAA--GACGGTTACCAAGAATCTTAACAAGATCATCGATAT 8234572 Query 8511 CAATTTTTATCCCTTGGAAGAAGCGCGCGTATCGAACATGCGCCACAGACCCGTTGGCGT 8570 || || || ||| || ||| || ||| ||| || | || | ||||| ||| | Sbjct 8234571 AAACTTCTACCCCCTGCCAGAGGCAAAGAAATCCAACTTGAGGCATCGTCCCGTGGGCAT 8234512 Query 8571 GGGCGTGCAAGGTCTGGCCGACGCGTTTGCCATGTTGCGCCTCCCCTACGAAAGCCAAGA 8630 || || || || | || ||||| | | |||| ||||||| ||||| |||| Sbjct 8234511 CGGTGTCCAGGGATTCGCTGACGCCCTAATTCTTATGCGTTTCCCCTATGAAAGTGAAGA 8234452 Query 8631 AGCGCGCATGCTCAACATAAAAATAGCGGAAACGGTGTATTACGGCGCATTAGAAGCCAG 8690 ||| | | | || | ||| ||||| | || |||||||| | |||||||| Sbjct 8234451 AGCCGGTCTCTTGAATCAGCAGATATTCGAAACCATCTACTACGGCGCCCTGGAAGCCAG 8234392 Query 8691 CTGTCAACTTGCCCGAGAATTG--GGCACGTACGAATCGTACGCGGGCAGCCCTGCCAGC 8748 ||| |||| |||| || || | ||| | || ||| | || | ||| || || | ||| Sbjct 8234391 TTGTGAACTGGCCC-AG-ATCGACGGCCCATATGAAACCTATGAGGGAAGTCCCGTGAGC 8234334 Query 8749 CGCGGAATATTGCAATACGACATGTGG---AATGTCACGCCCACCTCTTTGTGGAATTGG 8805 || || |||| |||||||||||| || || || | | | ||||| ||| | | Sbjct 8234333 AAAGGCATTCTGCAGTACGACATGTGGGACAAAGTGCCGACAAAC-CTTTG-GGACTGGC 8234276 Query 8806 AGCGATTTGAAACGCAAAATTGCTCAATTCGGTTTGCGCAATTCGCTGTTGGTGGCTTAC 8865 || | |||| || || |||| | || || || |||||||| || Sbjct 8234275 AG-AAACTGAAGGAGTCCATCAAGCAGCACGGTGTCCGGAACTCCCTGTTGGTTGCGCCT 8234217 Query 8866 ATGCCCACCGCCACGACTGCTCAAATAATGGGAAACAACGAATCCTTTGAGCCGTTCACC 8925 |||||||| || | ||||| ||||| ||||| ||||||||||| || ||||||| ||| Sbjct 8234216 ATGCCCACTGCGTCCACTGCCCAAATTATGGGCAACAACGAATCTTTCGAGCCGTACACA 8234157 Query 8926 AACAACGTGTACGTGAGACGAGTGTTGGCCGGCGATTTTTTAATGCTGAATCGTCATTTG 8985 | || | || || ||||| || | ||||| || | || | || | ||||||| Sbjct 8234156 ACGAATATTTATACCAGGCGAGTTCTGTCTGGCGAATTCCAAGTGGTTAACCATCATTTG 8234097 Query 8986 ATGCGCGACTTGATCGAAGCGGGCGTT----TACGACGACAAAATGCGCGATGCCATCGT 9041 | | ||| | | || ||| || || ||||||||| | | | | ||| | Sbjct 8234096 TTAAGGGACCT-AACGGAGCTGGACTTGTGGGACGACGACATGAAGAACCAAATCAT--T 8234040 Query 9042 GGAAGCCAACGGCAGCGTTCAGAACATTGACGCGGTGCCTCAACACATTAAAGAGCTGTA 9101 || || ||| | ||||| ||||| || | || || | | || ||||| Sbjct 8234039 TCCAG-CAGGGGCTCAATCCAGAATATTGAGGCCATCCCCCAGAAGGTCCGCGATCTGTA 8233981 Query 9102 TAAAACCGTTTGGGAAAT-GAAGCAAAGCACGCTGATCGGCATGGCTGCGGATAGAGGCG 9160 ||||| || |||||||| || ||| || || ||||| || ||| |||| | Sbjct 8233980 CAAAACAGTGTGGGAAATCTCAGTGAAG-TCGACCATTAAGATGGCCGCAGATCGAGGAG 8233922 Query 9161 CTTTTATTGATCAGAGTCAATCTTTTAACGTGTTCGTAGCCGCACCAACTTACG---CTT 9217 | || || ||||||||||| || || ||| | || || | |||| || | Sbjct 8233921 CGTTCATAGATCAGAGTCAGTCGTTCAACATTCATGTGGCAGAGCCAAACTATGGAAAAC 8233862 Query 9218 TGATGTCCA-GCA-TTCATTATTTAACTTGGAAAATGGGTTTAAAAACAGGCATGTACTA 9275 | | ||||| || ||| |||| | |||||| ||| | ||||| || |||||||| Sbjct 8233861 TCACGTCCATACACTTC--TATT---CCTGGAAAGCTGGTCTCAAAACTGGAATGTACTA 8233807 Query 9276 TTTGCGCACAAAACCCGCCGC 9296 |||||||||| || || || Sbjct 8233806 CCTGCGCACAAAGCCAGCTGC 8233786 Score = 120 bits (132), Expect = 3e-22 Identities = 162/226 (72%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || |||| ||| | ||| | ||||| ||||| |||||||| ||||| | |||| | Sbjct 8331068 AGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGG 8331009 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 || || ||||| ||||| || || |||| |||||||||||| || || || |||||| Sbjct 8331008 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 8330949 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || ||||| || |||||| || | || || || | ||| || || || || Sbjct 8330948 TTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTG 8330889 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTT 134721 ||||| || || || | || |||||||| || ||||| |||| || Sbjct 8330888 ATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTGTT 8330843 >seq5238 Length=3592495 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| ||||| || || || ||||| || |||||||||||| | |||| | Sbjct 2679451 AGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGG 2679392 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| ||||| || || |||| |||||||||||| || || ||||| || Sbjct 2679391 CCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCC 2679332 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | ||||| || | ||||| || | || Sbjct 2679331 TTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTG 2679272 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| | ||||| ||||| |||||||| Sbjct 2679271 ATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234 >seq5402 Length=10656099 Score = 105 bits (116), Expect = 7e-18 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 134510 GTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTG 134569 ||| || || || ||||| || |||||||||||| | ||| | ||| || || || Sbjct 571662 GTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTCCTCCAGTTG 571721 Query 134570 TTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT 134629 ||||| || || |||| |||||||||||| || || ||||| || || || || || || Sbjct 571722 CTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTT 571781 Query 134630 TTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGT 134689 || || || | |||||||| | ||||| || | |||||||| ||||| || Sbjct 571782 GGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACCTCCAAGGTAATGGTCTTACCAGT 571841 Query 134690 TAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || || || || ||||||||| Sbjct 571842 CAAGGTCTTCACAAAGATCTGCATTTTG 571869 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 134517 GTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCT 134576 || || ||||| || |||||||| || || ||| | ||| |||||||| ||||| Sbjct 571441 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCGAGCTGCTTGCCG 571500 Query 134577 GCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTG 134636 || || |||| |||||||||||| || || || || || || || || || || || Sbjct 571501 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTC 571560 Query 134637 ACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTT 134696 || || | ||||| || | ||||| || || || ||||| || ||||| ||||| Sbjct 571561 ACGTTCTCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTC 571620 Query 134697 TTAACGAAAATTTGCAT 134713 || || || || ||||| Sbjct 571621 TTGACAAAGATCTGCAT 571637 >seq5395 Length=2659632 Score = 102 bits (112), Expect = 8e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | ||| | ||| || ||||| ||||| || |||||||| ||| Sbjct 975759 CCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 975818 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | |||| | ||| || ||||| || || || || |||| ||||||||| || || || Sbjct 975819 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 975878 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || || || || | |||||||| | || || Sbjct 975879 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACC 975938 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTG 134717 || || || ||||| || || || | || || |||||||||||||| ||| Sbjct 975939 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATGTTG 975989 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 134496 AGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGA 134555 || || | ||| | ||| || ||||| ||||| || |||||||||||| | |||| | Sbjct 975540 AGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGT 975599 Query 134556 GAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCT 134615 ||| || ||||| || || || || |||| ||||||||| || || || || || || Sbjct 975600 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCC 975659 Query 134616 TTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTA 134675 || || || || || || || || | || ||||| | || || || || || Sbjct 975660 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTG 975719 Query 134676 ATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || || || | || || ||||| || ||||| Sbjct 975720 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 975757 >seq5267 Length=4296760 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 21532 TCCACGCACAAACGATCCGCCACGAATTCAATGTATTGACACATGCTGTCGCAATTCATG 21591 ||||| || |||||||||||||||||| ||||| || ||||| ||||||||||||| Sbjct 668566 TCCACCAGCAGACGATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATG 668625 Query 21592 CCCAACAGATCGACCGGTAGCGCTTCGGTGAAAAACTCCTTCTCGATAGCCACCGCTTC 21650 || | || | || || | || ||||||| ||||||| ||| || ||||| || || Sbjct 668626 CCGATGAGGTTTACGGGCAAGGCATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATC 668684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505363508557960