Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq5396 363 2e-95 seq5267 102 1e-16 >seq5396 Length=9561034 Score = 363 bits (402), Expect = 2e-95 Identities = 1229/1891 (65%), Gaps = 50/1891 (3%) Strand=Plus/Plus Query 68364 CTTATCCAATGTAAACTGAATGG-GTGAGGATGCGGGTTTTGTACGTAGATAGTACATAC 68422 |||||||| || |||||||||| || | | || || ||||| || || |||||||| | Sbjct 8233758 CTTATCCACGGTGAACTGAATGGCGTTTGCA-GCTGGCTTTGTGCGCAGGTAGTACATTC 8233816 Query 68423 CGGTTTTCAGACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTG 68482 | ||||| ||||| |||| ||||| || || || ||||| ||| ||| Sbjct 8233817 CAGTTTTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTG 8233876 Query 68483 GATCGGCTATATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCG 68542 | || || | |||||| || | ||| ||||| ||||| ||||| ||||||| |||||| | Sbjct 8233877 GCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGG 8233936 Query 68543 CCATTTTTATAATACTCTTT--TGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGAT 68600 |||| || || | ||| |||| |||||||| | || || | | | || Sbjct 8233937 CCATCTTAATGGTCGACTTCACTGAG--ATTTCCCACACTGTTTTGTACAGATCGCGGAC 8233994 Query 68601 ATCATCTGG---AAGGC-TCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTC 68655 | ||||| | ||| || |||| || || || || | ||| || ||| ||| Sbjct 8233995 CT--TCTGGGGGATGGCCTCAATATTCTGGATTGAGCCCCTGCTGGAAATGATTTGGTTC 8234052 Query 68656 TTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACT 68715 || || || || | |||||| | |||||||| | || | | ||| | ||||| Sbjct 8234053 TTCATGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACC 8234112 Query 68716 ATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACA 68775 | ||| ||||| ||||| | |||| | || |||||||| | || || || || | | Sbjct 8234113 ACTTGGAATTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAA 8234172 Query 68776 GATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAA 68835 ||||| || || |||| |||||| ||||| || ||||| |||||||| || ||||| | Sbjct 8234173 GATTCGTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGG 8234232 Query 68836 CTATTTCTAAGACCATG-TGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATC 68894 || | | ||| || || | |||| || || || | | ||| |||||||| | Sbjct 8234233 GAGTTCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTT 8234291 Query 68895 AGATGGTACAACATTCCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGA--TCCA 68952 | || || | ||| | ||||| || ||||| || || || || || ||| Sbjct 8234292 TGTCGGCACTTTGTCCCACATGTCGTACTGCAGAATGCCTTTGCT--CACGGGACTTCCC 8234349 Query 68953 TTATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCG 69012 | ||| |||||||| || || || | || ||||||||||| || || | || ||| Sbjct 8234350 TCATAGGTTTCATATGGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCG 8234409 Query 69013 TAATAAATTGTTTCGAAAATCTTCTTATT---GAGATCTTGTGCTTCTAGACTATCGAAT 69069 || || || |||||||| |||| || ||| |||| | |||||| ||| || | Sbjct 8234410 TAGTAGATGGTTTCGAATATCTGCTGATTCAAGAGACC---GGCTTCTTCACTTTCATAG 8234466 Query 69070 GGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTA 69129 || || | | |||||| | || || || |||||||| || || || || | || | | Sbjct 8234467 GGGAAACGCATAAGAATTAGGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGA 8234526 Query 69130 TGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 69189 || ||| || || | | || ||||| | || || | || ||||| || || || Sbjct 8234527 TGCCTCAAGTTGGATTTCTTTGCCTCTGGCAGGGGGTAGAAGTTTATATCGATGATCTTG 8234586 Query 69190 TTAAGATT-TCGGACTACTACTT--TAACCACGTCCTTTAGTTTGAGAAAATCAAATCGT 69246 |||||||| | || | ||| || || ||||| ||||| ||||| || || Sbjct 8234587 TTAAGATTCTTGGTAACCGTCTTGGTA---ACTTCCTTAAGTTTCTTGAAATCGTAT-GT 8234642 Query 69247 CCATCT-----ATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAACTGCTACCT 69301 | ||| | || ||||| || || || | ||||| | || || ||||| | || Sbjct 8234643 -CTTCTCGGGAGTGACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCT 8234701 Query 69302 CATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGATAGTCCCCA 69361 | | | | | || | | || ||||| || | || || || ||||| || || | Sbjct 8234702 CGTCCGGAGAGGAGTACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGA 8234761 Query 69362 GATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAG 69421 ||| ||||| || ||||| |||| ||||| ||||| | || || | || | |||| Sbjct 8234762 CATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAG 8234821 Query 69422 TTTCAATCTGAGATTCGATAATAGATTTCCAAACGACCCTAGCATTTA--TTACGGTCTT 69479 |||| | ||| | || ||||| | ||| | | ||| || | | ||| || Sbjct 8234822 TTTCGACCTGTGCCTCAATAATGGCGAACCACAAGGATTGAGCCTTAACCGTTCGG--TT 8234879 Query 69480 GTAACGCTTCTCTTTTTCATATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATC 69539 | ||| ||||| ||||| | ||| | | |||||||||||| ||||| ||||| Sbjct 8234880 GGCACGACCCTCTTGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATC 8234939 Query 69540 ATCCAATCCAGGACATTCATTTGGACACATCAATGACCACACATCATCATCCTTAACTCG 69599 | | ||||| |||| || |||||||| | |||||| | ||| ||| || || Sbjct 8234940 GTGAAGGCCAGGGCATTTATGCGGACACATTAGTGACCAATCTCCATTGGCCTCGACGCG 8234999 Query 69600 TTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTC 69659 |||||||| |||||||| ||||| || || || ||||| | || | ||| || || Sbjct 8235000 CTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGATTCTCCTC 8235059 Query 69660 ATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAG 69719 || || || || || ||||| || || ||||| | | || || ||||| || || || Sbjct 8235060 CTTGCCGGTGTTCTTCTTAAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAG 8235119 Query 69720 ATATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTT 69779 || || || | | | || || || || ||||||||||| | || | || || Sbjct 8235120 GTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCGACATAGCGCGCCACATT 8235179 Query 69780 ATTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATA 69839 || |||| |||| ||| |||| | ||||| || | || || || || |||| | Sbjct 8235180 GTTGAAGACCCTCAACATGGGAACCAGGCCATTGGAAGTGCCGTTCGTGCCGCAAATCGA 8235239 Query 69840 ACTTCCTCTTGCGCGAATATTACTAATAGA----TAGACCTATTCCTCCTGCCATTTTAG 69895 | || |||| || || ||| || || || || || || ||| || | Sbjct 8235240 GGTGCCCTTTGCTCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGACTTCG 8235295 Query 69896 AGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGT 69955 |||| | || || | | || | | | | || ||||| ||| || || ||||| Sbjct 8235296 AGATCATGGCGCACTGCTCCACGGACTTAAAAATGCCCTCGATGGAGTCGGCTGTCATGG 8235355 Query 69956 TAAGAAGAAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAG 70015 | | || ||||| |||| || | | | || | || ||| | || || | Sbjct 8235356 TCAAGAGGAAACAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGCGTTGGCG 8235415 Query 70016 ATGCGTGAGTGAACCATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATAT 70075 | || |||||||| || || || | || || || ||||| | |||| ||||||| Sbjct 8235416 ACGCATGAGTGAAGTATCGCTCCGACAAGAGGTTATAAGTTTCCACGGCTGCATCTATAT 8235475 Query 70076 CCCACTGATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTT 70135 || ||| ||||| ||||| || |||||||||||||| || || || || | ||| Sbjct 8235476 CCTCTCCATGGATTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCAGCGATTT 8235535 Query 70136 TATTATTTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATG 70195 | ||| | |||| ||| || || ||| || || || |||||||||||||| || Sbjct 8235536 TTCCGTTTCTCTTCAGCAGATAGGAACGTTCGAGGGTCTTGAACCCAAAATAGTTATACC 8235595 Query 70196 AAAAGTCTCTTTCGTAAATAATAACAGAATT 70226 |||||| | ||||| || ||| ||| || Sbjct 8235596 CAAAGTCGCGGTCGTAGATTATAGAAGAGTT 8235626 >seq5267 Length=4296760 Score = 102 bits (112), Expect = 1e-16 Identities = 294/448 (66%), Gaps = 6/448 (1%) Strand=Plus/Plus Query 39317 ACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 39376 |||||||| ||||| || || || |||||||| || || || ||||| |||| Sbjct 668446 ACTCCCATGCGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGC 668505 Query 39377 GATATATTTTCCATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAAT 39436 || || | |||||||| | || || || | | ||| || | || || || | Sbjct 668506 GAGATCATCTCCATGAAGTTGAAGGGGTTCTTGGTATTGTAGATCTTGCCAACGCCCAGC 668565 Query 39437 TCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATT 39496 || | || | ||| || || ||||| ||||| ||| | || |||||||| Sbjct 668566 TCCACCAGCAGACGATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATG 668625 Query 39497 CCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCT 39556 || ||||| || || || | || || || || ||||| | || ||| | || || || Sbjct 668626 CCGATGAGGTTTACGGGCAAGGCATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATCG 668685 Query 39557 GTTATTATC--GATGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTA 39614 || ||| |||| | | ||| || ||| | |||| || || | ||||| | Sbjct 668686 CGGATGATCTCGATGATGCG--CTCGCGCCTGGGTCGCTGCACCAAGTGCTGGAACATCA 668743 Query 39615 AGCA-GGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTG 39673 ||| ||| ||||| || || |||||||| || | || | ||||| || || || Sbjct 668744 -GCACGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTC 668802 Query 39674 AGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAG 39733 ||||| ||||| ||||| ||||| || ||||| || |||| || || || ||| Sbjct 668803 AGTCCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAG 668862 Query 39734 AAGATGCCTTCTACTGCTGCAAATGCAA 39761 |||||||| || || || ||||| |||| Sbjct 668863 AAGATGCCCTCGACGGCGGCAAAGGCAA 668890 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686861377533720