Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq5267 84.2 2e-11 >seq5267 Length=4296760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 229/350 (65%), Gaps = 3/350 (1%) Strand=Plus/Minus Query 43931 GAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTAC 43990 || || || || || ||||| || || || ||||| || || | || ||||| |||||| Sbjct 669098 GAGGCTCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTAC 669039 Query 43991 AGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050 ||| | ||||| || || |||||| ||| |||| || | |||| || || Sbjct 669038 AGTGTGCTGATCGACACCTACATCCGGGATCCGCACCAGCGCGAATACCTGTTCAACGCC 668979 Query 44051 ATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTCA 44110 || || ||| | || || | || | || || |||||||||||| ||||| || Sbjct 668978 ATCGAGACAATGCCCGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATCTCCTCC 668919 Query 44111 AATGATTC---TTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTT 44167 || | | || || || || | | || ||||| | || || ||||| ||||| Sbjct 668918 AAGGCGGCCAACTTCGGGGAGCGCATCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTC 668859 Query 44168 TCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACG 44227 || || || |||| || ||| | ||||| || ||| ||||||| || |||| Sbjct 668858 AGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACC 668799 Query 44228 TTTTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGC 44277 || || || ||| | || || || || ||| | || ||||| ||||| Sbjct 668798 TTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTTGC 668749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429246615615