Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq5396 159 3e-34 seq5238 98.7 8e-16 seq5402 89.7 4e-13 >seq5396 Length=9561034 Score = 159 bits (176), Expect = 3e-34 Identities = 982/1566 (63%), Gaps = 29/1566 (2%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || |||||||| |||||||| || | || ||||| ||||||| || ||||| || Sbjct 8233759 TTATCCACGGTGAACTGAATGGCGTTTGCAGCTGGCTTTGTGCGCAGGTAGTACATTCCA 8233818 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGGTAATTGGGT 130525 |||||||| ||| ||| ||| ||| ||| | | || || || || Sbjct 8233819 GTTTTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTGGC 8233878 Query 130526 TGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGCC 130585 | ||||| ||||||| ||| || ||||| || || || || | ||||| ||| Sbjct 8233879 TCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGGCC 8233938 Query 130586 ATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTGT 130645 || | | | | || | || ||||| | || ||||| ||||| | | | Sbjct 8233939 ATCTTAATGGTCGACTTCACTGAGATTTCCCACACTGTTTTGTACAGATCGCGGACCTTC 8233998 Query 130646 TTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCATA 130705 | ||| ||| | |||| || | || || ||| || |||| ||| ||| Sbjct 8233999 TGGGGGATGGCCTCAATATTCTGGATTGAGCCCCTGCTGGAAATGATTTGGTTCTTCATG 8234058 Query 130706 CTTTTATCGTACAATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGATTTGA 130765 | || |||| | |||| || || ||| |||||||| |||| | ||| Sbjct 8234059 TCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTTGG 8234118 Query 130766 AAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATTCG 130825 || || |||| ||| || || || ||||| || | ||| |||| || || |||||| Sbjct 8234119 AATTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAAGATTCG 8234178 Query 130826 TTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAATTA 130885 |||||||| | ||||| || || | || |||||||| || || || || || || Sbjct 8234179 TTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGTTC 8234238 Query 130886 CGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAGGT 130945 || | ||||||| | |||| ||||| || | ||| ||||| || || || Sbjct 8234239 CGGACACCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTTGTCGG- 8234297 Query 130946 TTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATTCGAAC 131005 || |||| |||||| || | || || |||||||| || ||||||| || | Sbjct 8234298 --CACTTTGTCCCACATGTCGTACTGCAGAATGCCTTTGCTCACGGGACTTCCCTCATAG 8234355 Query 131006 GATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGTAATAA 131065 | ||| || || |||| | ||||| || || ||||||| || ||||| || Sbjct 8234356 GTTTCATATGGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAG 8234415 Query 131066 ATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAAATTTC 131125 ||||||||| || || | ||| || | |||| | || || || || || | Sbjct 8234416 ATGGTTTCGAATATCTGCTGATTCAAGAGACCGGCTTCTTCACTTTCATAGGGGAAACGC 8234475 Query 131126 ATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTTTTAAA 131185 || | ||| | ||||| |||| ||||| | || | |||||| || | ||| | || Sbjct 8234476 ATAAGAATTAGGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCAAG 8234535 Query 131186 TTACATTTACGCGAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGTTTAAAT 131243 || |||| | | | || ||| || | ||| || || || || ||||| | || Sbjct 8234536 TTGGATTTCTTTG--CCTCTGGCAGGGGGTAGAAGTTTATATCGATGATCTTGTTAAGAT 8234593 Query 131244 TGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAGTTTCGA 131303 | || | | || || || | ||| | |||||| | || | ||| Sbjct 8234594 TCTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGT---CTTCTCGG 8234650 Query 131304 GGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGTCATAAT 131363 | | || || || | || || |||| || || ||||| | ||||| | Sbjct 8234651 GAGTGACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAG 8234710 Query 131364 CGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAAATTTTGTT 131423 | | |||| || ||||| | |||||| || |||| ||| |||||||| | ||| || | Sbjct 8234711 AGGAGTACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCT 8234770 Query 131424 GATTGCTTTTAGCATTCACATG-GTCCTTGTACATCATGTAGGGCGTGCCCGTTTCGACT 131482 | ||||| || | | || | ||||| ||| ||||||||| | || |||||||| Sbjct 8234771 GGTTGCTCTT-CCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACC 8234829 Query 131483 TGAGTTTCAATAATGTATCGAAAGAGTTTTCGAGCA--GACAATTGATATTTGTATTGGC 131540 || | ||||||||| |||| | | || | || || | || ||||| Sbjct 8234830 TGTGCCTCAATAATG--GCGAACCA-----CAAGGATTGAGCCTTAACCGTTCGGTTGGC 8234882 Query 131541 -CG--CGTTTT--TCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAACTGTC 131595 || | | || || || || || |||||| |||| || | | ||| || | || Sbjct 8234883 ACGACCCTCTTGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTG 8234942 Query 131596 CAAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAACTCGCTT 131655 | || |||| ||||||||||| ||||| | || || || || ||||| Sbjct 8234943 AAGGCCAGGGCATTTATGCGGACACATTAGTGACCAATCTCCATTGGCCTCGACGCGCTT 8235002 Query 131656 CATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGT 131715 |||||| | ||| || | ||| | ||||| |||||||| | || ||||| || | Sbjct 8235003 CATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGATTCTCCTCCTT 8235062 Query 131716 ACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAATA 131775 || | | || || | | | || || || | ||||| |||||||| |||| || Sbjct 8235063 GCCGGTGTTCTTCTTAAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTA 8235122 Query 131776 CACTGCCATTGCGCCTTTGCGCTTACCGCCT---TGATTAACATGACGAACCATGTTGTT 131832 | || | || || ||||| |||||| |||| |||| || ||| ||||| Sbjct 8235123 AATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCGACATAGCGCGCCACATTGTT 8235182 Query 131833 GTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATGTAGCT 131892 | | || | ||||||||| ||| || |||| | || || |||| ||| || | Sbjct 8235183 GAAGACCCTCAACATGGGAACCAGGCCATTGGAAGTGCCGTTCGTGCCGCAAATCGAGGT 8235242 Query 131893 GCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATTAG 131952 ||| || |||| ||| || ||||| |||||||| || ||| | | || ||||| | Sbjct 8235243 GCCCTTTGCTCGGATGCAATGGACGTTAAGTCCAATGCCGCCGGCCGACTTCGAGATCAT 8235302 Query 131953 TGCGCA 131958 ||||| Sbjct 8235303 GGCGCA 8235308 >seq5238 Length=3592495 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || ||||||||| || | |||| |||| || ||||| || ||| Sbjct 2679430 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 2679371 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || |||||||| ||||| || || | ||||| || || ||||||| ||| Sbjct 2679370 GCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 2679311 Query 27171 AGGGTTTCTACAGTGTCTGT-GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | | || | ||||| | |||| || || | || || || | ||||| || || || Sbjct 2679310 ACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAG-GTGATGGTCTTGCCGGTGAGGGT 2679252 Query 27230 TTTCACAAAGATTTGCAT 27247 |||||| ||||||||||| Sbjct 2679251 TTTCACGAAGATTTGCAT 2679234 >seq5402 Length=10656099 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || ||||||| || | ||||| || | || || || || || || ||||||||| | Sbjct 571639 CCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 571698 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | || |||| || || || || |||||| | || |||||||| ||||| || || Sbjct 571699 AGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 571758 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || ||||||| |||| | || | ||||| | || || || Sbjct 571759 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACC 571818 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | || || |||| || ||||||||||| ||||| Sbjct 571819 TCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 571865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424905797001576