Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5396 170 2e-37 seq4488 107 2e-18 >seq5396 Length=9561034 Score = 170 bits (188), Expect = 2e-37 Identities = 639/989 (65%), Gaps = 21/989 (2%) Strand=Plus/Plus Query 110708 TAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAG 110767 || || || |||||||| || || || |||| || || |||| ||||| || ||||| Sbjct 8234146 TAAATATTCGTTGTGTACGGCTCGAAAGATTCGTTGTTGCCCATAATTTGGGCAGTGGAC 8234205 Query 110768 GCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGTTCC 110827 || || ||||| || || | ||| || ||| || | ||| | || ||||||| ||| Sbjct 8234206 GCAGTGGGCATAGGCGCAACCAACAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTCC 8234265 Query 110828 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTT-CACCTT--CCCACATGTCAAACTGA 110884 || || | |||||| | || || || ||| || |||||||||| |||| Sbjct 8234266 TTCAGTTTCTGCCAGTCCCAA---AGGTTTGTCGGCACTTTGTCCCACATGTCGTACTGC 8234322 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | |||| | | ||||| |||||| |||||||||| | || | | | ||| Sbjct 8234323 AGAATGCCTTTGCTCACGGGACTTCCCTCATAGGTTTCATATGGGCCGTCGATCTGGGCC 8234382 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 | |||||| || || ||||||| ||| || |||||||| || || | ||||| Sbjct 8234383 AGTTCACAACTGGCTTCCAGGGCGCCGTAGTAGATGGTTTCGAATATCTGCTGATTCAAG 8234442 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAA-AATAAATACATCCGCGAGACC 111063 |||||| || ||| | | | | || || || ||| | | || |||| || Sbjct 8234443 AGACCGGCTTCTTCACTTTCATAGGGGAAACG-CATAAGAATTAGGGCGTCAGCGAATCC 8234501 Query 111064 TTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGA---CTTTCGCGCAGTCTCAAC 111120 || ||||| | || | || | || | || || || |||| | | | | | Sbjct 8234502 CTGGACACCGATGCCCACGGGACGATGCCTCAAGTTGGATTTCTTTGCCTCTGGC---AG 8234558 Query 111121 GGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTC 111180 ||| || || ||| | || |||| ||| ||||| |||||||| |||| || | ||| Sbjct 8234559 GGGGTAGAAGTTTATATCGATGATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACTTC 8234618 Query 111181 ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGAT 111240 | |||||| | |||| | || |||| | |||| || | |||||||| Sbjct 8234619 CTTAAGTTTCTTGAAATCGTATGTCT---TCTCGGGAGTGACGAACATGTTGAGGGCGAT 8234675 Query 111241 TGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACA 111300 |||||||| ||||| || || |||| ||| | | |||||| | |||||||| || Sbjct 8234676 GGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAGTACTCCACGATTTCTGTGCA 8234735 Query 111301 TAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATC 111360 |||||| | ||| || || || | ||||| ||||| |||||| ||||||| ||||| Sbjct 8234736 CAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATC 8234795 Query 111361 CTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCA-AA 111419 ||| | ||||||||||| | || || || ||||| | | ||| || ||| || Sbjct 8234796 CTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAATGGCGAACCACAA 8234855 Query 111420 CATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGG 111479 | | || || | |||||| || ||||| ||| ||||| || | Sbjct 8234856 GGATTGAGCCT-TAACCGTTCGGTTGGCACGACCCTCTTGCTCATACTTCTCATACAACT 8234914 Query 111480 CTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAG 111539 ||| || || || ||| | | ||| || || || || | ||||| | || | Sbjct 8234915 TTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGGCATTTATGCGGACACATTAGTG 8234974 Query 111540 ACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAA 111599 |||| | ||| |||| || |||||||| || || || || |||||||||| | | Sbjct 8234975 ACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGA 8235034 Query 111600 AGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCC 111658 | ||||| | ||| ||| || | || ||| || ||| || |||||||| Sbjct 8235035 ACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTT-CTTCTTAAGTTCCAGGAACTCA 8235093 Query 111659 ATGATATCCGCGTGCCATGGCTCAAGATA 111687 | || |||| |||||| ||||| || || Sbjct 8235094 AAGACGTCCGAGTGCCAGGGCTCCAGGTA 8235122 >seq4488 Length=490991 Score = 107 bits (118), Expect = 2e-18 Identities = 183/263 (70%), Gaps = 2/263 (1%) Strand=Plus/Minus Query 181806 TCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGCTCAAGAAGGTTAATGTTG 181865 || || || ||| | | || ||||| || ||||| | |||||| || || ||||| ||| Sbjct 138695 TCCTTTCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTAATATTG 138636 Query 181866 TTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGT-ATCCGCAAGGGACACTTCACC 181924 |||| || | ||| | ||||| |||||||| || ||| ||| | || || ||||| Sbjct 138635 TTTGCGCCCACAAAGTTCTGGGCCAGATTAACGATTGTCATCTGCA-GCGAAACCTCACC 138577 Query 181925 GTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGCCAACTGTGCCACCTTCATTTCATC 181984 ||||||||| || ||| | || || || | | | | ||| |||||||||| ||| Sbjct 138576 GTGGTGGTAGGCCGACATCTCGGCCACGGAACCAGATAGCTGGGCCACCTTCACCTCACG 138517 Query 181985 TTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGACCATC 182044 ||| ||| | | |||||| | ||||||| || | ||| ||||| || || || Sbjct 138516 CTTGTCGTTTCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAGGCCGTC 138457 Query 182045 CGCCATATGGGCAATAGAGCGCT 182067 | ||| | || ||| ||||||| Sbjct 138456 CACCAGACTGGGAATGGAGCGCT 138434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627988642240800