Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq5267 174 2e-38 seq5396 154 2e-32 >seq5267 Length=4296760 Score = 174 bits (192), Expect = 2e-38 Identities = 307/443 (69%), Gaps = 6/443 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || ||| ||||||||||||||| ||||| ||||||| ||| ||||||| Sbjct 668461 TACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 668520 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAATTGCTGGC--ACTCCAATCTGTTTGAGGAGAC 129845 || | || |||||||| | || | || || || || || | || || |||| Sbjct 668521 AAGTTGAAGGGGTTCTTGGTATTGTAGAT--CTTGCCAACGCCCAGCTCCACCAGCAGAC 668578 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||||| ||| | || ||||||| ||||| ||| | ||||| ||||||||||| Sbjct 668579 GATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATGCCGATGAGGTTTA 668638 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 || | || || || |||| ||| ||| ||| ||||||| || || | ||| || Sbjct 668639 CGGGCAAGGCATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATCGCGGATGATCTCGA 668698 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGT-CTTGAAGAGTTCCACGGCAAACTCC 130024 ||| ||| | ||| || ||| | |||| || ||| | ||||||||| || Sbjct 668699 TGATGCGCTC-GCGCCTGGGTCGCTGCACCAAGTGCTGGAACATCAGCACGGCAAAGTCG 668757 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 ||| || |||||||| ||||||||||| || || |||||| ||| || ||||| ||| Sbjct 668758 CAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGA 668817 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||||| ||||||||| | || ||| ||||||||| ||||| || Sbjct 668818 CCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCGACG 668877 Query 130145 CACGCGAACGCAAAGAGACGCTC 130167 || || |||| || ||||| Sbjct 668878 GCGGCAAAGGCAATGATGCGCTC 668900 >seq5396 Length=9561034 Score = 154 bits (170), Expect = 2e-32 Identities = 589/911 (65%), Gaps = 19/911 (2%) Strand=Plus/Plus Query 118181 ATAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 118240 ||| ||||| || ||||| ||||| || | || ||||| |||| |||||||| ||||| Sbjct 8234145 ATAAATATTCGTTGTGTACGGCTCGAAAGATTCGTTGTTGCCCATAATTTGGGCAGTGGA 8234204 Query 118241 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTC 118300 || |||||||| || || | | ||| ||| |||| ||| | | | | ||| || Sbjct 8234205 CGCAGTGGGCATAGGCGCAACCAACAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTC 8234264 Query 118301 CTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTG---CCACATATCAAACTG 118357 ||| || | |||||| | || |||||| | | | |||||| || |||| Sbjct 8234265 CTTCAGTTTCTGCCAGTCCCAA---AGGTTTGTCGGCACTTTGTCCCACATGTCGTACTG 8234321 Query 118358 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 118417 || || |||| | | | || ||||||| | || ||||||||||| || | || || Sbjct 8234322 CAGAATGCCTTTGCTCACGGGACTTCCCTCATAGGTTTCATATGGGCCGTCGATCTGGGC 8234381 Query 118418 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCAT 118477 || ||| | || || || ||||| ||| || || ||||| || || | ||||| Sbjct 8234382 CAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAGATGGTTTCGAATATCTGCTGATTCAA 8234441 Query 118478 TGCCTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAA-AATAAATACATCCGCGAGAC 118536 ||| || || ||| | | || | ||| || ||| | | || |||| | Sbjct 8234442 GAGACCGGCTTCTTCACTTTCATAGGGGAAAC-GCATAAGAATTAGGGCGTCAGCGAATC 8234500 Query 118537 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCT-CCACG 118595 | |||||||||| ||| | || ||||| |||| || || ||| || ||| || | Sbjct 8234501 CCTGGACACCGATGCCCACGGGACGATGCCTCAAGTTGGATTTCTTTGC-CTCTGGCAGG 8234559 Query 118596 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 118655 || || || || ||||||| | | | || ||||| ||||| || ||| || | ||| Sbjct 8234560 GGGTAGAAGTTTATATCGATGATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACTTCC 8234619 Query 118656 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 118715 | ||| || | | |||| | || |||| | |||| || | |||||||| Sbjct 8234620 TTAAGTTTCTTGAAATCGTA--TG-TCTTCTCGGGAGTGACGAACATGTTGAGGGCGATG 8234676 Query 118716 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCAC 118775 || |||| || || || | |||| ||| | | |||||| | ||||| |||||| Sbjct 8234677 GATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAGTACTCCACGATTTCTGTGCAC 8234736 Query 118776 AAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 118835 ||||| | ||| |||||||| | |||| || || ||| |||| || |||||| Sbjct 8234737 AAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCC 8234796 Query 118836 TTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-- 118893 || | |||||||| || | || || || || | || | ||| || ||| | Sbjct 8234797 TTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAATGGCGAACCACAAG 8234856 Query 118894 CATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGG 118953 || | ||| || || |||||| || ||||||| ||| ||||| || | Sbjct 8234857 GATTG--AGCCTTAACCGTTCGGTTGGCACGACCCTCTTGCTCATACTTCTCATACAACT 8234914 Query 118954 CTTCAAACTCTTCACCCACGGCCTC-TGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGA 119012 ||| || || || ||| | || ||| || || || |||| || || | || Sbjct 8234915 TTTCGAATTCATCGCCCCACACATCGTGA-AGGCCAGGGCATTTATGCGGACACATTAGT 8234973 Query 119013 GACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAG 119072 ||||| | ||| |||| || |||||||| ||||| || || ||||| || || || Sbjct 8234974 GACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAG 8235033 Query 119073 AAGAGATCCCG 119083 || ||||| || Sbjct 8235034 AACAGATCGCG 8235044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618392504779880