Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5396 185 1e-41 seq4488 98.7 1e-15 seq5267 96.9 4e-15 >seq5396 Length=9561034 Score = 185 bits (204), Expect = 1e-41 Identities = 638/987 (65%), Gaps = 15/987 (2%) Strand=Plus/Minus Query 104618 TATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGT 104677 || || ||||| |||||| |||| || | |||||||| || | ||| || Sbjct 8235122 TACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTGGAACTTAAGAAGAACACCGGC 8235063 Query 104678 GACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATG 104737 | |||||| || ||||||||| |||| ||| || ||||| || |||||||| ||| Sbjct 8235062 AAGGAGGAGAATCGCGCCCGCGATCTGTTCTACGCCCTGTGGATACCCGATCTCTTTATG 8235003 Query 104738 AAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTC 104797 ||| | || |||| | ||| ||||||| || | ||||| | || ||||| || Sbjct 8235002 AAGCGCGTCGAGGCCAATGGAGATTGGTCACTAATGTGTCCGCATAAATGCCCTGGCCTT 8234943 Query 104798 TCCGATGCCGTGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGG 104857 ||||| ||| || || || ||| | || ||||| ||| |||| ||||| Sbjct 8234942 CACGATGTGTGGGGCGATGAATTCGAAAAGTTGTATGAGAAGTATGAGCAAGAGGGTCGT 8234883 Query 104858 GCGACTGCGACGGTGCCAGCTGCCGATG--TGTGGAAAGCTATTCTCAAGTCTCAAACCG 104915 || | ||||| ||| | || ||||| || ||| | || | || || Sbjct 8234882 GCCAACCGAACGGTTAAGGCT--CAATCCTTGTGGTTCGCCATTATTGAGGCACAGGTCG 8234825 Query 104916 AGACTGGTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGA 104975 | ||||| | || |||||||| | || || ||||| ||| ||||| || || ||| Sbjct 8234824 AAACTGGAAACCCCTACATGCTGTTTAAGGATGCCTGCAACAGGAAGAGCAACCAGCAGA 8234765 Query 104976 ATTTGGGTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAG 105035 || | || |||||| | ||| | || ||||||||| |||| | | | Sbjct 8234764 ATGTCGGCACCATCAAGTGCAGCAACTTGTGCACAGAAATCGTGGAGTACTCCTCTCCGG 8234705 Query 105036 ATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGA 105095 | |||| || || || ||| | ||||| ||||| ||| || || || ||| |||| Sbjct 8234704 ACGAGATTGCAGTCTGCAACTTGGCATCCATCGCCCTCAACATGTTCGTCACTCCCGAGA 8234645 Query 105096 CAAAGACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAA 105155 |||||| |||| | ||||| | |||||||| || || || ||||| || || | Sbjct 8234644 ---AGACATACGATTTCAAGAAACTTAAGGAAGTTACCAAGACGGTTACCAAGAATCTTA 8234588 Query 105156 ACAGAGTTATTGATAGAAATTTTTACCCCGTTG-AGACTGCTCGTAAATCTAATATGAGA 105214 ||| | || |||| ||| || |||||| | ||| || ||||| || |||| Sbjct 8234587 ACAAGATCATCGATATAAACTTCTACCCCCTGCCAGAG-GCAAAGAAATCCAACTTGAGG 8234529 Query 105215 CACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCAC 105274 || ||||| | || ||||||| ||||| |||| || | | |||||| || | Sbjct 8234528 CATCGTCCCGTGGGCATCGGTGTCCAGGGATTCGCTGACGCCCTAATTCTTATGCGTTTC 8234469 Query 105275 GCATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCAC 105334 | | ||| || ||||| | ||| || ||||| || ||||| || || Sbjct 8234468 CCCTATGAAAGTGAAGAAGCCGGTCTCTTGAATCAGCAGATATTCGAAACCATCTACTAC 8234409 Query 105335 GCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAG 105394 | ||| || || || |||| || |||| || | || || ||||||||||||| |||| Sbjct 8234408 GGCGCCCTGGAAGCCAGTTGTGAACTGGCCCAGATCGACGGCCCATATGAAACCTATGAG 8234349 Query 105395 GGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGG--AAGGTG-AGACCAAG 105451 || ||| | |||| | || || | || ||||||| || ||| ||| || Sbjct 8234348 GGAAGTCCCGTGAGCAAAGGCATTCTGCAGTACGACATGTGGGACAAAGTGCCGACAAAC 8234289 Query 105452 CTTCACTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGT 105511 ||| | |||||| | || ||||| ||||||| || | ||| | || ||| Sbjct 8234288 CTT---TGGGACTGGCAGAAACTGAAGGAGTCCATCAAGCAGCACGGTGTCCGGAACTCC 8234232 Query 105512 CTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGC 105571 || | | || || ||||| || || ||||| || ||||| |||| || || |||| Sbjct 8234231 CTGTTGGTTGCGCCTATGCCCACTGCGTCCACTGCCCAAATTATGGGCAACAACGAATCT 8234172 Query 105572 TTTGAACCCTACACGACGAACATCTAT 105598 || || || ||||| ||||| || ||| Sbjct 8234171 TTCGAGCCGTACACAACGAATATTTAT 8234145 >seq4488 Length=490991 Score = 98.7 bits (108), Expect = 1e-15 Identities = 171/246 (70%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 168457 ATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGCTCAAGAAGATTGATATT 168516 |||||| || ||| | | || ||||| |||||||| | ||||| || ||||| ||||| Sbjct 138696 ATCCTTTCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTAATATT 138637 Query 168517 GTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTG-TCCGCGAGAGAGACTTCAC 168575 ||||| |||| ||| | |||| || || || || || || || || || |||| Sbjct 138636 GTTTGCGCCCACAAAGTTCTGGGCCAGATTAACGATTGTCATCTGC-AGCGAAACCTCAC 138578 Query 168576 CGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGCCAACTGCGCCACTTTCATCTCAT 168635 |||||||||| || | |||| || || | | | | ||| ||||| |||| |||| Sbjct 138577 CGTGGTGGTAGGCCGACATCTCGGCCACGGAACCAGATAGCTGGGCCACCTTCACCTCAC 138518 Query 168636 CCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGAGACCAT 168695 |||| || | | |||||| | | |||| |||||||| || ||||| || || | Sbjct 138517 GCTTGTCGTTTCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAGGCCGT 138458 Query 168696 CCGCCA 168701 || ||| Sbjct 138457 CCACCA 138452 >seq5267 Length=4296760 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 ||||| || | || ||||| || ||||| ||||||||| || |||| | | Sbjct 668900 GAGCGCATCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCC 668841 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||| ||||| |||||||| ||||| ||||| || || ||||||||||||||| ||| Sbjct 668840 ATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACGAGCTCATC 668781 Query 94924 TCTCGTGACGAGGGACTCCACCAAGAGTTTGCGGTG 94959 || || |||||||| || ||| || ||||| ||| Sbjct 668780 TCCCGCGACGAGGGCCTGCACTGCGACTTTGCCGTG 668745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583220533132520