Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq5396 172 2e-37 seq1455 87.8 5e-12 seq5376 86.0 2e-11 >seq5396 Length=9561034 Score = 172 bits (190), Expect = 2e-37 Identities = 175/228 (77%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || | || | ||| ||||| || ||||| ||||| ||||| Sbjct 8331078 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 8331019 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || |||||||| || || || ||||| ||||| ||||| |||||||| ||||| Sbjct 8331018 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 8330959 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||||||||| |||||||| || ||||| ||||| || || | ||| || ||||| || Sbjct 8330958 AATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 8330899 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || || || || || || || |||||||| Sbjct 8330898 CTCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 8330851 >seq1455 Length=1567854 Score = 87.8 bits (96), Expect = 5e-12 Identities = 193/288 (67%), Gaps = 5/288 (2%) Strand=Plus/Minus Query 349532 CCCGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTA 349591 ||||| || || || | |||||| | | || |||||||||| || ||||| ||| | Sbjct 1499518 CCCGAGGAGATCTCCGCCATGGTTCTGGGCAAGATGAAGGAAACCGCCGAAGCCTATCTG 1499459 Query 349592 GGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGT 349651 || | | || || |||| ||| | || || || ||||| || || |||||||||||| Sbjct 1499458 GGCAAGAAGGTCACCCATGCCGTTGTCACCGTGCCGGCCTACTTCAACGATGCCCAGCGT 1499399 Query 349652 TCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAA 349711 || || || ||||| || || || || | | || | | || || || ||| Sbjct 1499398 CAGGCCACCAAGGATGCCGGTGTGATCGCCGGTCTGCAGGTGATGCGCATCATCAACGAA 1499339 Query 349712 CCCACTGCTGCAGCAATTGCATATGGGCTTGATAA-AATGAGTGACCAAGaaaaaaaTAT 349770 |||||||| || || ||||| || || || || || || ||| | || || || | Sbjct 1499338 CCCACTGCCGCGGCCATTGCCTACGGTCTGGACAAGAAGGAGGG----CGAGAAGAACGT 1499283 Query 349771 TCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAAC 349818 || | || ||||| || || || || || ||||| || || || || Sbjct 1499282 GCTGGTCTTCGATTTGGGCGGCGGCACCTTCGATGTCTCCCTGCTGAC 1499235 >seq5376 Length=10037194 Score = 86.0 bits (94), Expect = 2e-11 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 235888 AGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAA 235947 |||||||||||| ||| ||||||| ||||||||| ||||| ||||||||| |||||| | Sbjct 8136614 AGGGGGATGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGTGAGAGGTACGGGGATCGA 8136555 Query 235948 AACCCAGCATCTCCA 235962 ||| ||||||||| Sbjct 8136554 TGCCCCGCATCTCCA 8136540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515147175389969