Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq5396 221 1e-52 seq5267 125 8e-24 >seq5396 Length=9561034 Score = 221 bits (244), Expect = 1e-52 Identities = 503/755 (67%), Gaps = 4/755 (1%) Strand=Plus/Plus Query 79057 GATGCCAGGTTGCACACGGCCGTCTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCAC 79116 ||||||| |||||| || || |||||||||| || ||| | ||||||||||||| Sbjct 8234677 GATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAGTACTCCACGATTTCTGTGCAC 8234736 Query 79117 AAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCC 79176 || || ||||||||||||||| |||| ||||||||||||| ||| ||||| ||| Sbjct 8234737 AAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCC 8234796 Query 79177 TTGTAGCACATGTACGGCGTCCCGGTCTCAACCTGACTCTTGAGAACGCCGTCCCAGATG 79236 || | |||||| || | || || || ||||| || | || | || ||| | | Sbjct 8234797 TTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAATGGCGAACCACAAG 8234856 Query 79237 TCCCGGGCCCGGACAACCTTC--TTGTACCGACCCTGTGCGACGTACGTCCGGTACAACT 79294 | ||| || | ||| ||| ||||||| | | ||| || ||||||| Sbjct 8234857 GATTGAGCCTTAAC--CGTTCGGTTGGCACGACCCTCTTGCTCATACTTCTCATACAACT 8234914 Query 79295 CGTTGAAAGCCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGT 79354 | ||| | || || | |||||| | ||||| ||||| | ||||| ||||| || Sbjct 8234915 TTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGGCATTTATGCGGACACATTAGTG 8234974 Query 79355 GCCAGTCCTCGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGA 79414 ||| || | | ||| || || ||| ||||| || || ||||||||||| || Sbjct 8234975 ACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGA 8235034 Query 79415 AGAGGTCGCGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCA 79474 | || |||||| || ||||||| | ||| |||| || || || || || | Sbjct 8235035 ACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTAAGTTCCAGGAACTCAA 8235094 Query 79475 TGATGTCGGCGTGCCACGGCTCCAGATAGATGGCGAACGAACCCTTGCGCTTGCCGCCGC 79534 || ||| | |||||| |||||||| || ||||| || | ||| ||||||||||| | Sbjct 8235095 AGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTC 8235154 Query 79535 CCTGGTTGACGTACCGGGCCGTGTTGTTGAAAACTCGGAGCATGGGCACGATGCCGTCGG 79594 |||| | ||| || || ||| |||||||| || | | |||||| || | ||| | || Sbjct 8235155 CCTGATCGACATAGCGCGCCACATTGTTGAAGACCCTCAACATGGGAACCAGGCCATTGG 8235214 Query 79595 CGACGCCGTTCGTCCCGTTGATTCGTGTACCGCTCGCCCGAATGTTCGAGCAGTGGATTC 79654 ||||||||| ||| || || || | || || ||| | || | || Sbjct 8235215 AAGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTTGCTCGGATGCAATGGACGTTAAGTC 8235274 Query 79655 CGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTAGATGCCCT 79714 | ||||| |||| | |||| ||||| ||||||| || | | || | ||||||| Sbjct 8235275 CAATGCCGCCGGCCGACTTCGAGATCATGGCGCACTGCTCCACGGACTTAAAAATGCCCT 8235334 Query 79715 CGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCTCGACATCTGTGGGTTGTTCGTAC 79774 |||| |||||| | |||| | | ||||| || ||||| ||| ||| || || Sbjct 8235335 CGATGGAGTCGGCTGTCATGGTCAAGAGGAAACAAGACGACAGCTGCGGGCGATTTGTGG 8235394 Query 79775 CGGCGTTGAAGAGGGTCGGCGTCGCGTGCGTGAAG 79809 | ||| || || || |||| ||| || |||||| Sbjct 8235395 CAGCGGCAAAAAGCGTTGGCGACGCATGAGTGAAG 8235429 Score = 143 bits (158), Expect = 3e-29 Identities = 491/759 (65%), Gaps = 10/759 (1%) Strand=Plus/Minus Query 19195 CTTCACGCACGCGACGCCGACCCTTTTCAACGCCGGTACGAACAACCCGCAGATGTCGAG 19254 |||||| || ||| |||| || ||||| ||| | || || ||||||| ||||| Sbjct 8235429 CTTCACTCATGCGTCGCCAACGCTTTTTGCCGCTGCCACAAATCGCCCGCAGCTGTCGTC 8235370 Query 19255 CTGTTTCCTAGTGGCTATGAAGGATGACAGCATTGAGGGCATCTACGAGACGCTCAAGGA 19314 |||||||| || | |||| | ||| ||| |||||||| | || | | || | Sbjct 8235369 TTGTTTCCTCTTGACCATGACAGCCGACTCCATCGAGGGCATTTTTAAGTCCGTGGAGCA 8235310 Query 19315 GTGCGCGCACATCTCCAAGTGGTCCGGGGGTATCGGGATCCACTGCTCGAAT--ATCCGG 19372 |||||| ||||| |||| | |||| || || || | || || | | ||||| Sbjct 8235309 GTGCGCCATGATCTCGAAGTCGGCCGGCGGCATTGGACTTAACG--TCCATTGCATCCGA 8235252 Query 19373 TCGAGTGGTACACGAATCAATGGGACGAACGGAGTAGCCGACGGTATCGTCCCAATGCTC 19432 | | || || || || |||||||| || | || | || || ||| | Sbjct 8235251 GCAAAGGGCACCTCGATTTGCGGCACGAACGGCACTTCCAATGGCCTGGTTCCCATGTTG 8235192 Query 19433 CGCGTCTTCAACAACACGGCCAGGTACGTCAACCAGGGGGGCGGCAAACGCAAGGGCTCG 19492 | ||||||||||| ||| | || ||| | ||||| |||||||| || || | Sbjct 8235191 AGGGTCTTCAACAATGTGGCGCGCTATGTCGATCAGGGAGGCGGCAAGCGTCCCGGTGCC 8235132 Query 19493 TTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTGCGCCTG 19552 || ||||| ||||| ||||| |||||| |||||||| | || ||||| ||||| | Sbjct 8235131 TTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTGGAACTTAAGAAG 8235072 Query 19553 AACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGATTCCGGAC 19612 ||| || | ||||||| ||| ||||| || ||| ||| ||||||| || || Sbjct 8235071 AACACCGGCAAGGAGGAGAATCGCGCCCGCGATCTGTTCTACGCCCTGTGGATACCCGAT 8235012 Query 19613 CTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCGCACGAATGC 19672 || || ||| || || ||| | | ||| ||| || ||||| ||||| ||||| Sbjct 8235011 CTCTTTATGAAGCGCGTCGAGGCCAATGGAGATTGGTCACTAATGTGTCCGCATAAATGC 8234952 Query 19673 CCTGGCCTACCCGACGTCTACGGCGAGGCGTTCAATGAGTTGTACCGGACTTACGTAGC- 19731 |||||||| | ||| || | ||||| | ||| | ||||||| || || | ||| Sbjct 8234951 CCTGGCCTTCACGATGTGTGGGGCGATGAATTCGAAAAGTTGTATGAGAAGTATG-AGCA 8234893 Query 19732 CCAGGGCCGGTTCAA--GAAGGTGGTCCGGGCCCGGGACGTCTGGGACCGCGTCCTCAAA 19789 |||| || ||| ||| ||| ||| | | | ||| | | | | | Sbjct 8234892 AGAGGGTCGTGCCAACCGAA--CGGTTAAGGCTCAATCCTTGTGGTTCGCCATTATTGAG 8234835 Query 19790 AGCCAGGTCGAGACCGGCACACCGTACATGTGCTACAAGGACGCCGCGAACGCCAAGTCA 19849 |||||||| || || | || |||||| | ||||| ||| ||| ||| Sbjct 8234834 GCACAGGTCGAAACTGGAAACCCCTACATGCTGTTTAAGGATGCCTGCAACAGGAAGAGC 8234775 Query 19850 AATCAGAAGAACATCGGCGCGATCAAGTCGTCCAACCTGTGTACTGAAATCATGGAGGTT 19909 || ||| |||| ||||| | ||||||| |||| |||| || |||||| ||||| Sbjct 8234774 AACCAGCAGAATGTCGGCACCATCAAGTGCAGCAACTTGTGCACAGAAATCGTGGAGTAC 8234715 Query 19910 TCCAAGCCGGACGAGACTGCCGTGTGTAATCTGGCGTCC 19948 ||| |||||||||| ||| || || || |||| ||| Sbjct 8234714 TCCTCTCCGGACGAGATTGCAGTCTGCAACTTGGCATCC 8234676 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 78535 TAGATGTTGGTCGTGTACGGCTCGAAAGCCTCGTTGTTCCCCATGATCTGGGCGGTCGAG 78594 || || || || |||||||||||||||| |||||||| ||||| || ||||| || || Sbjct 8234146 TAAATATTCGTTGTGTACGGCTCGAAAGATTCGTTGTTGCCCATAATTTGGGCAGTGGAC 8234205 Query 78595 GCGGTCGGCATGGGTGCGACCAGTAGAGAATTCCGAAGACCATGCGTCTTGAT 78647 || || ||||| || || |||| || || ||||| | ||| ||| |||||| Sbjct 8234206 GCAGTGGGCATAGGCGCAACCAACAGGGAGTTCCGGACACCGTGCTGCTTGAT 8234258 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 20357 ATCAAGACCCACGGGCTTCGCAACTCGTTGCTCGTCGCGCCCATGCCGACCGCCTCGACC 20416 |||||| ||||| | || ||||| || | || ||||| ||||| || || || || Sbjct 8234258 ATCAAGCAGCACGGTGTCCGGAACTCCCTGTTGGTTGCGCCTATGCCCACTGCGTCCACT 8234199 Query 20417 GCCCAGATCATGGGGAACAACGAGGCTTTCGAGCCGTACACGACCAACATCTA 20469 ||||| || ||||| |||||||| |||||||||||||||| || || || || Sbjct 8234198 GCCCAAATTATGGGCAACAACGAATCTTTCGAGCCGTACACAACGAATATTTA 8234146 >seq5267 Length=4296760 Score = 125 bits (138), Expect = 8e-24 Identities = 349/529 (66%), Gaps = 11/529 (2%) Strand=Plus/Minus Query 59613 TCATTCTGGTCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAGCTC 59672 || |||||| |||| |||||| | || ||| || ||||||| || ||| || || Sbjct 669269 TCTTTCTGGACCGTGGAGGAGGTGGATCTCTCCAAGGACCTGACCGACTGGCACCGCCTG 669210 Query 59673 AATTACGACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGA 59732 || ||||||||| || |||||| | || |||||||||||||| || ||||| Sbjct 669209 AAGGACGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGC 669150 Query 59733 ATTGTGATGGAAAATATAGACATGAACTTTTCCAAGGATGTCCAGATTGCCGAGGCCCGG 59792 || || | || || | | | | ||| | |||| || ||||| | ||||| || Sbjct 669149 ATCGTTAACGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTGCAGATCACGGAGGCTCGC 669090 Query 59793 TCGTTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCAT 59851 | ||||| | | ||| ||| || ||| | ||||| |||| |||| | | Sbjct 669089 TGCTTCTATGGCTTCCAGATCGC-CATGGAGAACGTGCACTCGGAGATGTACAGTGTGCT 669031 Query 59852 GATCGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGAC 59911 |||||| | | || ||||||| | || | |||||| ||||| ||||| Sbjct 669030 GATCGACACCTACATCCGGGATCCGCACCAGCGCGAATACCTGTTCAACGCCATCGAGAC 668971 Query 59912 GTCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGATGAGTCCT----GGAG 59967 ||||| || || | || || || |||||| | ||||| |||| || | Sbjct 668970 AATGCCCGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATC--TCCTCCAAGGCG 668913 Query 59968 --CATCATTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGG 60025 || | || | | || |||| || ||||| ||| || || ||||||||| || Sbjct 668912 GCCAAC-TTCGGGGAGCGCATCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGG 668854 Query 60026 CTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTC 60085 | ||| | ||||||||||| || ||||| || || |||||||| |||| ||||| Sbjct 668853 CAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTC 668794 Query 60086 CAACGAGCTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTG 60134 ||||||||| || ||||| ||||||||||| || || ||||| ||| Sbjct 668793 CAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTTGCCGTG 668745 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548486931219120