Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq4488 172 6e-38 seq5267 149 7e-31 seq5396 136 4e-27 seq5238 109 6e-19 >seq4488 Length=490991 Score = 172 bits (190), Expect = 6e-38 Identities = 312/454 (69%), Gaps = 2/454 (0%) Strand=Plus/Minus Query 117152 CCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGAAC 117211 ||||||||||| ||||| ||||| || ||||| | |||||| | || || | || || Sbjct 138875 CCAGTTCCGATGCCCTCGGCACCGTTTATCAGCACCATCGGTATGATGGGCAGATACCAC 138816 Query 117212 TCAGGCTCCACCTGCAGACCGTCGTCCGTGACGTACTTGAGCACCGCATTGTCACTCGGA 117271 |||||| | || | | || |||||| ||| | |||| | || ||| ||| Sbjct 138815 AGAGGCTCGATCTTCTGGCCATCGTCCACCTGGTAGTCCAGCAGAGGATCGTCCAGGGGA 138756 Query 117272 TCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGCAGCA 117331 | | | ||| |||| || | | ||||||||| ||||||| ||| || | Sbjct 138755 TGGTAGATGAGTCGGGTCAGGGGAGACATCAAAGTGAAAATATAACGAGCGCTGGCGCAA 138696 Query 117332 TCCTTGCCACCAG-CAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAGGTT 117390 ||||| || || | |||| || |||||||| || || | ||||||| || || | || Sbjct 138695 TCCTTTCCGCCCGTCAAG-CGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTAATATT 138637 Query 117391 GTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTCACC 117450 ||| |||||||||||||| || |||| || || || || || || ||||||| Sbjct 138636 GTTTGCGCCCACAAAGTTCTGGGCCAGATTAACGATTGTCATCTGCAGCGAAACCTCACC 138577 Query 117451 ATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTCTGA 117510 ||||| || |||| | ||| |||||| | || | ||||| |||||||||| || Sbjct 138576 GTGGTGGTAGGCCGACATCTCGGCCACGGAACCAGATAGCTGGGCCACCTTCACCTCACG 138517 Query 117511 CGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTCAGACCATC 117570 | | ||| |||||| ||||| | |||||||||||||||| ||||||||| || || Sbjct 138516 CTTGTCGTTTCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAGGCCGTC 138457 Query 117571 CGCCACGTGAGGGATCGAACGCTTGATGTCCTCA 117604 | ||| || || || |||| | ||||| || Sbjct 138456 CACCAGACTGGGAATGGAGCGCTCGTTGTCCGCA 138423 Score = 149 bits (164), Expect = 7e-31 Identities = 309/455 (68%), Gaps = 10/455 (2%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || ||||||||||| |||||||| | ||| | |||||| | || || || || Sbjct 138875 CCAGTTCCGATGCCCTCGGCACCGTTTATCAGCACCATCGGTATGATGGGCAGATACCAC 138816 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 ||||| | || || || || |||| | ||| | || | | || ||| ||| Sbjct 138815 AGAGGCTCGATCTTCTGGCCATCGTCCACCTGGTAGTCCAGCAGAGGATCGTCCAGGGGA 138756 Query 151996 TCGAATATCCGTCGAGTCATAGGAC---TCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 | | | || |||| |||| ||| ||||| ||||| || || || | |||||| Sbjct 138755 TGGTAGATGAGTCGGGTCAGGGGAGACATCAAA---GTGAAAATATAACGAGCGCTGGCG 138699 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 |||||| || || | || || || || ||||| || ||||| || || || | Sbjct 138698 CAATCCTTTCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTAATA 138639 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 ||||| |||||||| || ||||| |||| ||| || || || |||||| | ||| Sbjct 138638 TTGTTTGCGCCCACAAAGTTCTGGGCCAGATTAACGATTGTCATCTGCAGCGAAACCTCA 138579 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTC- 152231 |||||||| || |||| | ||| || | | | || | | ||| |||||||||| || Sbjct 138578 CCGTGGTGGTAGGCCGACATCTCGGCCACGGAACCAGATAGCTGGGCCACCTTCACCTCA 138519 Query 152232 CG-TCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAAC 152290 || | ||| ||| |||||| |||| | | |||||||||||||| ||| |||| | Sbjct 138518 CGCTTGTC--GTTTCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAGGC 138461 Query 152291 CGTCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 ||||||||| ||||| || |||| | ||||| Sbjct 138460 CGTCCACCAGACTGGGAATGGAGCGCTCGTTGTCC 138426 >seq5267 Length=4296760 Score = 149 bits (164), Expect = 7e-31 Identities = 529/815 (65%), Gaps = 19/815 (2%) Strand=Plus/Plus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || || ||| ||| || || ||||||||||| || |||| |||||| ||||||| Sbjct 668461 TACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATG 668520 Query 74523 CAGTCGAAAGGGTTCTTTGCACCGTAAATA--GGCTTCTCCCCAAACTGTGCCATGAGGC 74580 ||| ||| |||||||| | | ||| || | | | ||| | || ||| || | Sbjct 668521 AAGTTGAAGGGGTTCTTGGTATTGTAGATCTTGCCAACGCCC--AGCTCCACCAGCAGAC 668578 Query 74581 GATCCGCCACAAATTGAATGTACTGCGTCATTTCTCCCGCATCCATGCCGATGAGTTTGC 74640 |||||||||| |||| |||||||||| ||| | || |||||||||||| || Sbjct 668579 GATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATGCCGATGAGGTTTA 668638 Query 74641 ACGGCAGTGCCTCGGTGATAAACTCACTCTCCACCTCGCAAGCCCATTG--GACAATCTT 74698 |||| || ||||||| ||||| ||| | | || | ||| | || |||| Sbjct 668639 CGGGCAAGGCATCGGTGAGGAACTCCTGCTCTA--TGGCCACAGCATCGCGGATGATCTC 668696 Query 74699 GTGAATGTCTTTG-GAAGGGCACTTTTCCCTCAGGTGAGAGTAAAGCGTCACGGCAAACT 74757 | ||| | | | || | | | | || ||| | | | | ||||||||| | Sbjct 668697 GATGATGCGCTCGCGCCTGGGTCGCTGCAC-CAAGTGCTGGAACATCAGCACGGCAAAGT 668755 Query 74758 CCTGATGCGAGCCTTCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAA 74817 | ||| ||| || || | | || | || || || || | || || ||||| | Sbjct 668756 CGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGTCCCGGCATCA 668815 Query 74818 GTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGA 74877 | || |||||||||| ||| || |||| |||| || |||||||||||||| |||| Sbjct 668816 GACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCGA 668875 Query 74878 CACACGCAAAGGCGACAAGGCGTTGCGCGAAC---GGTGCATCGGAAGTCATCCAAGTCT 74934 | |||||||| | | ||| | | |||| | || | ||| | ||||| | Sbjct 668876 CGGCGGCAAAGGCAATGATGCGCTCCCCGAAGTTGGCCGCCTTGGAGGAGATCCAGGAAA 668935 Query 74935 GAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTTGGAAGAGGCTTG 74994 | ||||| || || || || || || || || | || ||||| || | ||| ||| | Sbjct 668936 GGGCCCAGTCCGCCTTGCGCTTCACAGCGGGCATTGTCTCGATGGCGTTGAACAGGTATT 668995 Query 74995 CCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACGTCTCCGAATGAA 75054 | || | |||||| || | |||| |||| | |||| ||||||| || | Sbjct 668996 CGCGCTGGTGCGGATCCCGGATGTAGGTGTCGATCAGCACACTGTACATCTCCGAGTGCA 669055 Query 75055 TCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCAATCTGTACATCC 75113 ||| || ||| |||| | | ||||| | || ||||| | ||||| || ||| Sbjct 669056 CGTTCTCCATGG-CGATCTGGAAGCCATAGAAGCAGCGAGCCTCCGTGATCTGCACCTCC 669114 Query 75114 TT--TGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCGGCGAAAAAAG 75171 | |||| || | | | ||||| | |||||||| || ||||||||||| || | Sbjct 669115 TGGCTGAAGCGCTC--GACCAGGTTCTCGTTAACGATGCCATCGGAGGCGGCGAAGAAGG 669172 Query 75172 CCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTGTCCCAATCCTTCAGGT 75231 |||| || ||| ||||||||||| ||||| | || || ||| || |||||| Sbjct 669173 CCAGCACGTGCGAGATGAAGTGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCGGTCAGGT 669232 Query 75232 CCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAA 75266 || | | ||| | |||||| || ||||||||| Sbjct 669233 CCTTGGAGAGATCCACCTCCTCCACGGTCCAGAAA 669267 >seq5396 Length=9561034 Score = 136 bits (150), Expect = 4e-27 Identities = 451/699 (65%), Gaps = 2/699 (0%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 ||||| || || || ||||||| || || ||||| || |||| ||| ||| ||||| Sbjct 8235431 TACTTCACTCATGCGTCGCCAACGCTTTTTGCCGCTGCCACAAATCGCCCGCAGCTGTCG 8235372 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 || ||||| || | |||| | ||||| ||||| ||||| | || | | || Sbjct 8235371 TCTTGTTTCCTCTTGACCATGACAGCCGACTCCATCGAGGGCATTTTTAAGTCCGTGGAG 8235312 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGT 53449 |||| ||| ||||| |||| | | || || || || | || | | |||| Sbjct 8235311 CAGTGCGCCATGATCTCGAAGTCGGCCGGCGGCATTGGACTTAACGTCCATTGCATCCGA 8235252 Query 53450 GCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTC 53509 || || ||||| | || || ||||||||| || |||| | || || ||| | Sbjct 8235251 GCAAAGGGCACCTCGATTTGCGGCACGAACGGCACTTCCAATGGCCTGGTTCCCATGTTG 8235192 Query 53510 CGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGTCG 53569 | ||||||||||| ||| || || ||| | ||||| || || ||||| || | Sbjct 8235191 AGGGTCTTCAACAATGTGGCGCGCTATGTCGATCAGGGAGGCGGCAAGCGTCCCGGTGCC 8235132 Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || ||||| ||||| ||||| |||||| | ||| | | ||||| || || || | Sbjct 8235131 TTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTGGAACTTAAGAAG 8235072 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688 || || | || |||| ||| ||| || ||||| ||| || |||||||| || || Sbjct 8235071 AACACCGGCAAGGAGGAGAATCGCGCCCGCGATCTGTTCTAC-GCCCTGTGGATACCCGA 8235013 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||||| ||| | || ||| | | || |||| || ||||| ||| | | || Sbjct 8235012 TCTCTTTATGAAGCGCGTCGAGGCCAATGGAGATTGGTCACTAATGTGTCCGCATAAATG 8234953 Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAGT 53808 ||| ||||| || | ||| | || || || || | || ||||| || ||| | Sbjct 8234952 CCCTGGCCTTCACGATGTGTGGGGCGATGAATTCGAAAAGTTGTATGAGAAGTATGAGCA 8234893 Query 53809 TCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGAG 53868 |||| || ||| | ||| ||||| | | ||| || || | || Sbjct 8234892 AGAGGGTCGTGCCAACCGAACGGTTAAGGCTCAATCCTTGTGGTTCGCCATTATTGAGGC 8234833 Query 53869 CCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCAA 53928 ||||| || || |||| || |||||| | |||||| | |||| ||||||||| Sbjct 8234832 ACAGGTCGAAACTGGAAACCCCTACATGCTGTTTAAGGATGCCTGCAACAGGAAGAGCAA 8234773 Query 53929 CCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 |||| |||| ||||| |||||| | |||||||| || Sbjct 8234772 CCAGCAGAATGTCGGCACCATCAAGTGCAGCAACTTGTG 8234734 Score = 86.0 bits (94), Expect = 7e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 55484 CGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCAAC 55543 || ||||||||| | || ||||| ||||| || ||||| || || || || ||||||||| Sbjct 8234240 CGGAACTCCCTGTTGGTTGCGCCTATGCCCACTGCGTCCACTGCCCAAATTATGGGCAAC 8234181 Query 55544 AACGAGGCGTTCGAGCCGTACACGACCAACATCTA 55578 ||||| | |||||||||||||| || || || || Sbjct 8234180 AACGAATCTTTCGAGCCGTACACAACGAATATTTA 8234146 >seq5238 Length=3592495 Score = 109 bits (120), Expect = 6e-19 Identities = 196/281 (70%), Gaps = 9/281 (3%) Strand=Plus/Plus Query 158944 AACTCGCGGATGCTGTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGT 159003 |||||||| | |||||||| ||||| || ||||| || |||| ||| | | Sbjct 398510 AACTCGCGCACACTGTGCGTTTCTCCCGTGGCAATGACGTAGTCGGAGGGAGAGTCGCGC 398569 Query 159004 TGGAGCATGAGCCACATGGCCTCGACGTAATC-CTGCGCGTGACCCCAGTCGCGCTTGGC 159062 || ||||| | |||||||||||| |||||||| ||| ||||| ||||||||||| || | Sbjct 398570 TGCAGCATCATCCACATGGCCTCCACGTAATCGCTG-GCGTGTCCCCAGTCGCGTTTCGA 398628 Query 159063 ATCCATGTTCCCGAGCTCGATGACTTTTCCA--GACTTTTTCCA---CTCAGCCAGACCG 159117 |||| || || ||||||| | | |||| ||| | | || |||| | | Sbjct 398629 GTCCAGATTGCCCAGCTCGA--AGTACTCCATTTGCTTGTGATAGATCTTGGCCACGCTG 398686 Query 159118 AGCGTGATCTTGCGCGTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGA 159177 | ||||| || | |||||||| | | || || ||| ||| ||||| ||||| Sbjct 398687 CGGGTGATTTTCCTGGTCACAAAGTTCTCGCCACGTCGTGGGCTCTCGTGGTTGAACAGG 398746 Query 159178 ATGCCGGTACAAGCGAACAGGTTATAGGACTCGCGGTAATT 159218 ||||| | |||||| ||| ||| |||| ||||||||| || Sbjct 398747 ATGCCATTGCAAGCGTACATGTTGTAGGCCTCGCGGTAGTT 398787 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547178221575400