Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq5402 163 3e-35 seq5396 161 1e-34 seq5395 161 1e-34 seq4488 159 4e-34 seq5238 149 7e-31 seq5267 82.4 9e-11 >seq5402 Length=10656099 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| | ||||||||||| || || || ||||| ||| || | Sbjct 571637 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCATCT 571578 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | || ||||||| || || |||||||||||||||||||| ||||| ||| Sbjct 571577 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 571518 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| |||||||| | || || || | || || || Sbjct 571517 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTTTCTGATTACAAC 571458 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || | ||| | || | ||||| || |||||| Sbjct 571457 ATCCAGAAGGAGTCGACCTTGCATTTGGTTCTCCGTCTGCGAGGTGGA 571410 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| ||||| | || || ||||| ||||| | ||||| ||| | Sbjct 571866 AATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATTACCTTGGAGGTGGAGCCCTC 571807 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| ||||||| || || |||||||||||||| || || ||||| || Sbjct 571806 CGACACGATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 571747 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||||| || || || || |||||||| ||||| | |||||||| | ||||| || Sbjct 571746 GCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTGTCCGACTACAA 571687 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || ||||| | ||| | ||||| |||||||| Sbjct 571686 CATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGCGGTGG 571639 >seq5396 Length=9561034 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || |||||||| || | Sbjct 8330851 ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACGCTTGAGGTCGAACCTTCG 8330910 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || || ||||||||||| || |||||||||||||| ||| Sbjct 8330911 GATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGATCAG 8330970 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || ||||| | |||||||| Sbjct 8330971 CAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTATAAC 8331030 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||| | || | || ||||||| || ||||| Sbjct 8331031 ATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCGTCTGCGTGGTGG 8331077 >seq5395 Length=2659632 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || || |||||||| || || |||||||| ||| | Sbjct 975757 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 975698 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||| || || ||||||||||||||||| || ||||||||| Sbjct 975697 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 975638 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||| | || ||||| | ||||| || Sbjct 975637 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 975578 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || | ||||| || ||||| Sbjct 975577 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 975531 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| || || |||||||| || || |||||||| ||| | Sbjct 975985 ATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 975926 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || ||||||||||||||||| || ||||||||| Sbjct 975925 GACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 975866 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||| | || ||||| | || || || Sbjct 975865 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTACAAC 975806 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || | || | || || || ||||| Sbjct 975805 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGCCTCCGTGGTGG 975759 >seq4488 Length=490991 Score = 159 bits (176), Expect = 4e-34 Identities = 303/444 (68%), Gaps = 4/444 (1%) Strand=Plus/Plus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| |||||||| ||| ||||||||| ||||| |||||||||||||| | | Sbjct 138434 AGCGCTCCATTCCCAGTCTGGTGGACGGCCTGAAGCCAGGTCAGCGCAAGGTGATGTTCA 138493 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 ||||| |||||| ||| | |||| |||||||||| ||||| || || | ||||| Sbjct 138494 CCTGCTTCAAGAGAAACGACAAGCGTGAGGTGAAGGTGGCCCAGCTATCTGGTTCCGTGG 138553 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||| ||||||| |||||||| |||| ||||| ||| || || || || || | Sbjct 138554 CCGAGATGTCGGCCTACCACCACGGTGAGGTTTCGCTGCAGATGACAATCGTTAATCTGG 138613 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGA 32200 | ||||||||||| || ||||| || | || | || |||||| || ||||| || | Sbjct 138614 CCCAGAACTTTGTGGGCGCAAACAATATTAATCTGCTGGAGCCACGCGGTCAGTTCGGTA 138673 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC--CCGTCTCGC 32258 | || | | || || |||||| || ||| | ||||| || ||||| | || | Sbjct 138674 CTCGCTTGACGGGCGGAAAGGATTGCGCCAGCGCTCGTTATATTTTCACTTTGATGTCTC 138733 Query 32259 ACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTGA 32318 ||| ||| || || | | | || ||||||| | |||| | ||| | | || Sbjct 138734 CCCT--GACCCGACTCATCTACCATCCCCTGGACGATCCTCTGCTGGACTACCAGGTGGA 138791 Query 32319 TGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAA 32378 || || ||| | ||||||| ||| || || | | |||||| | || | || Sbjct 138792 CGATGGCCAGAAGATCGAGCCTCTGTGGTATCTGCCCATCATACCGATGGTGCTGATAAA 138851 Query 32379 CGGTGCAGAAGGCATCGGAACGGG 32402 |||||| || ||||||||||| || Sbjct 138852 CGGTGCCGAGGGCATCGGAACTGG 138875 >seq5238 Length=3592495 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| || || || || ||||||||||| || || | ||||| ||| | Sbjct 2679234 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 2679293 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| ||||||| || || |||||||||||||| || || ||||| ||| Sbjct 2679294 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 2679353 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||| | || ||||| | ||||| || Sbjct 2679354 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCCGACTACAAC 2679413 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || || || || || | || || |||||||| Sbjct 2679414 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGCCTACGCGGTGG 2679460 >seq5267 Length=4296760 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 64771 TCTATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTG 64830 || ||||||||||| || ||||| || |||||||| || ||| | || || |||||||| Sbjct 668843 TCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACGAGCTC 668784 Query 64831 ATCTCTCGGGACGAGGGGCTCCACCAAGAATTTGCGGT 64868 ||||| || |||||||| || ||| || ||||| || Sbjct 668783 ATCTCCCGCGACGAGGGCCTGCACTGCGACTTTGCCGT 668746 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570271027195760