Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq5165 187 2e-42 seq5396 104 2e-17 >seq5165 Length=2344106 Score = 187 bits (206), Expect = 2e-42 Identities = 429/643 (67%), Gaps = 10/643 (2%) Strand=Plus/Plus Query 29825 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 29884 || ||| ||| |||| ||||| | ||| | ||| ||||| | | ||||| ||| Sbjct 2001989 TTGATCACCAGCTTGGGGAAGGGCCGCGGCGTGCGCTCCAGCTGCTCCCTTAGCGGCTCC 2002048 Query 29885 ACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCTAGC 29944 |||| | ||| |||||||| | ||| |||| | |||| ||||| || || || | || Sbjct 2002049 ACGTGGTTCAGATAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCGGGCTTCAGG 2002108 Query 29945 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 30004 || || || || || ||||||| ||||| || | |||| ||||||||| ||||| || Sbjct 2002109 CCCGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACG 2002168 Query 30005 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC--- 30061 || || |||||||| | ||| ||||| ||||| || |||||||| ||| ||| | Sbjct 2002169 CCCAGGCCCATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGCTCACCG-CGCGCCTG 2002227 Query 30062 ----ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTT 30117 || || ||||| || | ||||||||| ||||| ||||| | ||| Sbjct 2002228 CGAGACATAGAACTGGGCCAGGCAGTGGCACGGCGGAAGGGCCATCTTTGGTATGTCGAG 2002287 Query 30118 GGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCAC 30177 ||| |||||||| ||| ||||||||||||||| || || ||| |||| ||| | Sbjct 2002288 GGGATTCCAGGCCGACATGATGATGCGCCTGTCCGAGGGATTCTTCTTGATCGTGTCGAT 2002347 Query 30178 GGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TGCCCTCATGTCCGTGTACT 30236 | | ||| ||| || | ||| | || ||| || | | || || | ||||| Sbjct 2002348 CACCTGGCGCAACTGGTCGATGCCCTTGCCGCTGTAATCGTCGTCGCAGGTGC-CGTACT 2002406 Query 30237 CTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGT 30296 | || || || || | ||||||||| ||||| ||||| |||||||| || | | | | Sbjct 2002407 CGGCCCCAAAGTGACGCCACTGGAAGCCGTAAACCGGGCCCAGGTCGCCGACGGCGCGCT 2002466 Query 30297 GCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCC 30356 | | ||| ||||||| || || |||| | ||| |||||||||| | || Sbjct 2002467 CCGTGTGCCCCAGTTTGTCCAGGAACTCCCTGGTGCTGTTCTCGTCCCAGATGTGCACGT 2002526 Query 30357 CCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCA 30416 ||| | ||| |||| || || || |||||||| | ||||||||| Sbjct 2002527 TCTTGGCCTGCAGCAGCTTGGCGTCCGTCTTGCCGGCCACGAACCAGATCAGCTCCTCGG 2002586 Query 30417 CGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 30459 | ||| | | ||||| | |||||| || || |||||||| Sbjct 2002587 CCACGCCGCGGAAGAAGACGCGCTTGGTGGTCAGCAGGGGAAA 2002629 >seq5396 Length=9561034 Score = 104 bits (114), Expect = 2e-17 Identities = 117/157 (75%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 49127 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49186 ||| ||||| | ||| ||||||||||| | ||||| ||||||||| |||||||| || Sbjct 2096245 GTTGAACAGGACGACTCCGAGGTTGCCGCGATAGTCCTCGTCCACCACGCCGGCACCCAC 2096304 Query 49187 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 49246 || || || || |||| |||||| || || | |||||||| | |||||| |||| Sbjct 2096305 ATCGATGAAGTTCTTCACGGCCAGCCCTGATCGCGGAGCCACTCGTCCGTAGGAGCCCTC 2096364 Query 49247 GGGCATCTTCACGGCCAGGTCCGTCTTTACCAGGGCC 49283 ||| | || ||| |||||| ||||| || | |||| Sbjct 2096365 GGGAACCTGCACTTGCAGGTCGGTCTTCACGATGGCC 2096401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406283050612116