Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04]
5,523 sequences; 169,378,599 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq5402 107 1e-18
seq5395 107 1e-18
seq5396 82.4 5e-11
>seq5402
Length=10656099
Score = 107 bits (118), Expect = 1e-18
Identities = 162/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| |||| ||||| | |||||||| | || |||||| || ||||| ||||| |||
Sbjct 571411 CCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAA 571470
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || |||| || || || || ||||| || || | |||||| || || || ||
Sbjct 571471 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 571530
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658
| |||||||||||| |||| || | || ||| | || ||||| ||||||
Sbjct 571531 ATTCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCAC 571589
Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706
|||| ||| || || || ||||| || || || ||||| ||||||||
Sbjct 571590 CTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637
Score = 107 bits (118), Expect = 1e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||| | ||||| || || || |||||| || ||||| || || || || || ||
Sbjct 571648 AGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGT 571707
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || ||||| || ||||| || || | |||||| || || || || | ||||||
Sbjct 571708 CCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCC 571767
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | || || | ||| ||||| | |||||| |||| |||
Sbjct 571768 TTGTCCTGGATC-TTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACCTCCAAGGT 571826
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || ||||| || || || |||||||| |||||||| |||
Sbjct 571827 AATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATTTTG 571869
>seq5395
Length=2659632
Score = 107 bits (118), Expect = 1e-18
Identities = 159/223 (71%), Gaps = 2/223 (1%)
Strand=Plus/Plus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
|| || | |||||| ||||| ||| |||||| || ||||| ||||| || || || ||
Sbjct 975768 AGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGT 975827
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
|||| || || || || ||||| || || | |||||| ||||| || || | |||||||
Sbjct 975828 CCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCC 975887
Query 34609 TTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGT 34667
||||| |||| || | ||||| | || ||||| | ||| || || | |||
Sbjct 975888 TTGTCCTGGATC-TTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGT 975946
Query 34668 TATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710
|| || || || || | || ||||| ||||| |||||||||
Sbjct 975947 GATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATGTTG 975989
Score = 98.7 bits (108), Expect = 6e-16
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | ||||| | |||||| ||||| ||| |||||| || ||||| || || |
Sbjct 975529 CGCCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGG 975588
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
| || || || |||| || || || || ||||| || || | |||||| ||||| || |
Sbjct 975589 ACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGG 975648
Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656
| | |||||||||||| |||| || | || ||| | || || || | |||
Sbjct 975649 GGATTCCCTCCTTGTCCTGGATC-TTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCG 975707
Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707
|| || | ||| || || || || || | || ||||| || |||||||||
Sbjct 975708 ACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 975758
>seq5396
Length=9561034
Score = 82.4 bits (90), Expect = 5e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 34489 AGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGC 34548
||||||| |||||| || | |||| |||||| ||||||||||| || || || || ||
Sbjct 8331068 AGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGG 8331009
Query 34549 TCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCC 34608
| ||||| || || || || || || || | |||||| || || || || | ||| ||
Sbjct 8331008 CCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCT 8330949
Query 34609 TTGTC 34613
|||||
Sbjct 8330948 TTGTC 8330944
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314708415058859
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |