Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq5165 230 2e-55 >seq5165 Length=2344106 Score = 230 bits (254), Expect = 2e-55 Identities = 470/699 (67%), Gaps = 6/699 (1%) Strand=Plus/Plus Query 6500 AGCTGGGGGAACGGTCGGGGCTCTCGTTGCAGCTGGATCCGGAGCCGCTCGATGTGGTTC 6559 |||| |||||| || || ||| || | |||||| || ||| |||| | ||||||| Sbjct 2001998 AGCTTGGGGAAGGGCCGCGGCGTGCGCTCCAGCTGCTCCCTTAGCGGCTCCACGTGGTTC 2002057 Query 6560 AGGTAGATATGCGCATCCCCCAACGTATGCACCAGCTCCCCAGGAACCAACCCCACGACA 6619 || |||| |||| || |||| || ||||| | || || || || ||| ||| Sbjct 2002058 AGATAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCGGGCTTCAGGCCCGTCACA 2002117 Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || |||||||||| |||||||| ||||| || |||||||| ||||| || | ||| Sbjct 2002118 TGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCC 2002177 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTC------CCCATTCGCGACGTAG 6733 ||||| | | ||| || ||||||||||| ||||| | | | || ||| ||| Sbjct 2002178 ATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGCTCACCGCGCGCCTGCGAGACATAG 2002237 Query 6734 AATTGGCAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATCCTTCGGGTTCCAC 6793 || ||| ||| ||||||||| || || |||||| || | || || ||||| Sbjct 2002238 AACTGGGCCAGGCAGTGGCACGGCGGAAGGGCCATCTTTGGTATGTCGAGGGGATTCCAG 2002297 Query 6794 GCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCGATCACGTACTGC 6853 || |||| | ||| | ||||| || ||| ||| | ||||||||||| | || Sbjct 2002298 GCCGACATGATGATGCGCCTGTCCGAGGGATTCTTCTTGATCGTGTCGATCACCTGGCGC 2002357 Query 6854 AGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATACTCCGCCCCAAAG 6913 | |||||| |||| || || || | |||| | ||||| ||||||||| Sbjct 2002358 AACTGGTCGATGCCCTTGCCGCTGTAATCGTCGTCGCAGGTGCCGTACTCGGCCCCAAAG 2002417 Query 6914 TGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCC 6973 || | ||||||||| ||||| |||||||||| |||||| | | || | | |||| Sbjct 2002418 TGACGCCACTGGAAGCCGTAAACCGGGCCCAGGTCGCCGACGGCGCGCTCCGTGTGCCCC 2002477 Query 6974 CGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAG 7033 | |||||||| || || | | | || |||||||||| | ||| | || | Sbjct 2002478 AGTTTGTCCAGGAACTCCCTGGTGCTGTTCTCGTCCCAGATGTGCACGTTCTTGGCCTGC 2002537 Query 7034 AGCTCCTTGGTGTTCGTGGCCCCCCTCACGAACCACAGCAGCTCCTCGACCACGCCCTTC 7093 ||| ||||| || ||| || ||||||||| | |||||||||| ||||||| Sbjct 2002538 AGCAGCTTGGCGTCCGTCTTGCCGGCCACGAACCAGATCAGCTCCTCGGCCACGCCGCGG 2002597 Query 7094 CAGTACACACGTTTCGTCGTCAGCAGCGGAAATTCGCCCCGAAGGTTGTATCGGGCCTGT 7153 || | || || || || |||||||| ||||| | | || | |||| | || ||| Sbjct 2002598 AAGAAGACGCGCTTGGTGGTCAGCAGGGGAAAGGAGTCGCGCATGTTGAAGCGCATCTGG 2002657 Query 7154 GTGCCGAACACGGAGAGGGTCCCCGTCCCGGTCCGGTCC 7192 | |||||||| ||| || || ||| | |||| || ||| Sbjct 2002658 GCGCCGAACAGGGACAGCGTGCCCACCGCGGTGCGATCC 2002696 Score = 230 bits (254), Expect = 2e-55 Identities = 470/699 (67%), Gaps = 6/699 (1%) Strand=Plus/Minus Query 34153 GGACCGGACCGGGACGGGGACCCTCTCCGTGTTCGGCACACAGGCCCGATACAACCTTCG 34212 ||| || |||| | ||| || || ||| |||||||| | ||| || | |||| | || Sbjct 2002696 GGATCGCACCGCGGTGGGCACGCTGTCCCTGTTCGGCGCCCAGATGCGCTTCAACATGCG 2002637 Query 34213 GGGCGAATTTCCGCTGCTGACGACGAAACGTGTGTACTGGAAGGGCGTGGTCGAGGAGCT 34272 | | ||||| |||||||| || || || || | || ||||||| ||||||||| Sbjct 2002636 CGACTCCTTTCCCCTGCTGACCACCAAGCGCGTCTTCTTCCGCGGCGTGGCCGAGGAGCT 2002577 Query 34273 GCTGTGGTTCGTGAGGGGGGCCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGAT 34332 | | ||||||||| || ||| || ||||| ||| | || | ||| | || Sbjct 2002576 GATCTGGTTCGTGGCCGGCAAGACGGACGCCAAGCTGCTGCAGGCCAAGAACGTGCACAT 2002517 Query 34333 CTGGGACGCTCACGGGTCTCGAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGA 34392 |||||||| || | | | || || |||||||| | |||| | | || | | Sbjct 2002516 CTGGGACGAGAACAGCACCAGGGAGTTCCTGGACAAACTGGGGCACACGGAGCGCGCCGT 2002457 Query 34393 GGGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGG 34452 |||||| |||||||||| ||||| ||||||||| | ||||||||||| ||||| | Sbjct 2002456 CGGCGACCTGGGCCCGGTTTACGGCTTCCAGTGGCGTCACTTTGGGGCCGAGTACGGCAC 2002397 Query 34453 GAGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTT 34512 |||| | || || || |||| |||||| ||| | ||||||||||| | Sbjct 2002396 CTGCGACGACGATTACAGCGGCAAGGGCATCGACCAGTTGCGCCAGGTGATCGACACGAT 2002337 Query 34513 GAAGCGGAACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCC 34572 ||| ||| || ||||| | ||| | |||| || ||||| || || | || Sbjct 2002336 CAAGAAGAATCCCTCGGACAGGCGCATCATCATGTCGGCCTGGAATCCCCTCGACATACC 2002277 Query 34573 TCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAATGGG----- 34627 |||||| || || ||||||||| ||| ||| ||||| ||| || | | | Sbjct 2002276 AAAGATGGCCCTTCCGCCGTGCCACTGCCTGGCCCAGTTCTATGTCTCGCAGGCGCGCGG 2002217 Query 34628 -GAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTCAA 34686 ||||| ||||||||||| || ||| | | |||||||| | || ||||| ||||| Sbjct 2002216 TGAGCTCTCCTGCCAGCTGTACCAAAGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAA 2002157 Query 34687 CATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCATGTCGTGGGGTTGGTTCCTGG 34746 ||| || ||||| |||||||| |||||||||| ||||| ||| || || || Sbjct 2002156 CATCGCCTCCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGCCTGAAGCCCGG 2002097 Query 34747 GGAGCTGGTGCATACGTTGGGGGATGCGCATATCTACCTGAACCACATCGAGCGGCTCCG 34806 || | ||||| || |||| || |||| |||| ||||||||| | |||| ||| | Sbjct 2002096 CGACTTTGTGCACACCATGGGCGACACGCACGTCTATCTGAACCACGTGGAGCCGCTAAG 2002037 Query 34807 GATCCAGCTGCAACGAGAGCCCCGACCGTTCCCCCAGCT 34845 | |||||| | || ||| || || |||||| |||| Sbjct 2002036 GGAGCAGCTGGAGCGCACGCCGCGGCCCTTCCCCAAGCT 2001998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231453084560