Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5396 122 6e-23 seq5395 104 2e-17 seq5238 93.3 3e-14 seq5402 91.5 1e-13 >seq5396 Length=9561034 Score = 122 bits (134), Expect = 6e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||||||||||| || || ||||| || || || || | Sbjct 8330848 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACGCTTGAGGTCGAACCT 8330907 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| ||| | |||| | ||| || ||| ||||||||||| | || |||||| Sbjct 8330908 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 8330967 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || |||||| | || || || ||||| || |||||||| | ||||| | || || Sbjct 8330968 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 8331027 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| || || |||||||| || || || || Sbjct 8331028 AACATTCAGAAGGAGTCCACTTTGCACTTGGT 8331059 >seq5395 Length=2659632 Score = 104 bits (114), Expect = 2e-17 Identities = 145/201 (72%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||| |||||||| || ||||| || || || || ||||| || || || || || Sbjct 975988 AACATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 975929 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| |||| | || | | ||||| || || | || ||||| Sbjct 975928 TCCGACACCATCGAGAATGTTAAGGCCAAGA-TCCAGGACAAGGAGGGAATCCCCCCAGA 975870 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || ||||| || || ||||| |||| |||||| | |||||| Sbjct 975869 CCAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTA 975810 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || |||||||| Sbjct 975809 CAACATCCAGAAGGAGTCCAC 975789 >seq5238 Length=3592495 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| ||||||||||| || || || ||||| | || || || | || Sbjct 2679234 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 2679293 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| | || | || || ||||| || || | || |||||||| Sbjct 2679294 GACACCATCGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 2679352 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||||| | || || |||||||| || ||||| |||| ||||| | ||| ||||| Sbjct 2679353 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCCGACTACAA 2679412 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || ||||| || Sbjct 2679413 CATCCAGAAGGAGTCGAC 2679430 >seq5402 Length=10656099 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || || | || || || || ||||| || || || || | | Sbjct 571637 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCATCT 571578 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || |||||||| Sbjct 571577 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 571518 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || || |||||||| || || || |||| ||||||| | ||||||||| Sbjct 571517 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTTTCTGATTACAAC 571458 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || || || ||||| || || ||||| ||| | | ||||||| ||| Sbjct 571457 ATCCAGAAGGAGTCGACCTTGCATTTGGTTCTCCGTCTGCGAGGTGGA 571410 Score = 89.7 bits (98), Expect = 3e-13 Identities = 142/201 (71%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| || || || ||| | || || || || || || | || || || || Sbjct 571868 AAAATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATTACCTTGGAGGTGGAGCCC 571809 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| | || | || || ||||| || || | || ||||| Sbjct 571808 TCCGACACGATTGAGAATGTGAAGGC-CAAGATCCAGGACAAGGAGGGCATCCCCCCAGA 571750 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 ||| |||||| | || || |||||||| |||||||| |||| ||| || | ||| || Sbjct 571749 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTGTCCGACTA 571690 Query 23787 CAACATACAAAAAGAGTCCAC 23807 |||||| || || ||||| || Sbjct 571689 CAACATCCAGAAGGAGTCGAC 571669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337986848045684