Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq5395 140 8e-28 seq5238 140 8e-28 seq5345 132 1e-25 seq4083 129 1e-24 seq4028 129 1e-24 seq5451 123 6e-23 seq4984 123 6e-23 seq5402 122 2e-22 seq5396 118 3e-21 seq2426 118 3e-21 seq5386 116 9e-21 seq1452 102 2e-16 seq5433 86.0 1e-11 seq5443 84.2 5e-11 >seq5395 Length=2659632 Score = 140 bits (154), Expect = 8e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | |||||| ||||| || || |||| |||||||||| || || | || || Sbjct 975774 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCC 975833 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || ||||| || || || || |||||||| Sbjct 975834 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 975893 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| |||| || || || | ||||| ||| Sbjct 975894 TGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTC 975953 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCATTTT 225716 ||||| |||| || || | ||| | |||||| || Sbjct 975954 TTGCCAGTCAGGGTCTTCACGAAAATTTGCATGTT 975988 >seq5238 Length=3592495 Score = 140 bits (154), Expect = 8e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || |||||||| || || || || |||| ||||| |||| || || | || || Sbjct 2679445 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 2679386 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || |||||||| || || || || || || || || || |||||||| Sbjct 2679385 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCC 2679326 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||||||| ||||||||||| || | ||||| || || ||||| ||| Sbjct 2679325 TGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 2679266 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || | ||||| | ||| | |||||| Sbjct 2679265 TTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234 >seq5345 Length=5870 Score = 132 bits (146), Expect = 1e-25 Identities = 130/168 (77%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| |||| || ||||| ||| |||| ||||| ||| | || || Sbjct 4724 CAAATTTATAATGTAATTGTTACTGCCCATGCTTTTATTATAATTTTTTTTATAGTAATA 4665 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || || ||||| | || ||||||||| Sbjct 4664 CCTATTATAATTGGAGGGTTTGGAAATTGATTAGTACCATTAATATTAGGAGCTCCTGAT 4605 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || |||||| | | || |||||||| |||||||||||||| ||| Sbjct 4604 ATAGCATTTCCACGAATAAATAATATAAGATTTTGATTACTACCTCCT 4557 Score = 87.8 bits (96), Expect = 4e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||| ||||||||||| ||||||||||| || | || || || ||||| | Sbjct 4147 ATACTTCAGGATGTCCAAAAAATCAAAATAAATGTTGGTATAAAATTGGGTCTCCTCCTC 4206 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTC 370760 | | ||| |||||||| |||||| ||||||| Sbjct 4207 CAGCTGGGTCAAAAAATGAAGTATTTAAATTTC 4239 >seq4083 Length=2605 Score = 129 bits (142), Expect = 1e-24 Identities = 130/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| |||| || ||||| ||| |||| ||||| ||| | || || Sbjct 904 CAAATTTATAATGTAATTGTTACTGCCCATGCTTTTATTATAATTTT-TTTATAGTAATA 962 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || || ||||| | || ||||||||| Sbjct 963 CCTATTATAATTGGAGGGTTTGGAAATTGATTAGTACCATTAATATTAGGAGCTCCTGAT 1022 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || |||||| | | || |||||||| |||||||||||||| ||| Sbjct 1023 ATAGCATTTCCACGAATAAATAATATAAGATTTTGATTACTACCTCCT 1070 Score = 89.7 bits (98), Expect = 1e-12 Identities = 86/108 (80%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||| ||||||||||| |||||||||||||| | || || || ||||| | Sbjct 1477 ATACTTCAGGATGTCCAAAAAATCAAAATAAATGTTGATATAAAATTGGGTCTCCTCCTC 1418 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | | || |||||||| ||||||||| ||| ||| ||||| |||| Sbjct 1417 CAGCCGGGTCAAAAAATGAAGTATTAAA--TTCGATCTGTTAATAACA 1372 >seq4028 Length=1000 Score = 129 bits (142), Expect = 1e-24 Identities = 130/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| |||| || ||||| ||| |||| ||||| ||| | || || Sbjct 5 CAAATTTATAATGTAATTGTTACTGCCCATGCTTTTATTATAATTTT-TTTATAGTAATA 63 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || || ||||| | || ||||||||| Sbjct 64 CCTATTATAATTGGAGGGTTTGGAAATTGATTAGTACCATTAATATTAGGAGCTCCTGAT 123 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || |||||| | | || |||||||| |||||||||||||| ||| Sbjct 124 ATAGCATTTCCACGAATAAATAATATAAGATTTTGATTACTACCTCCT 171 Score = 93.3 bits (102), Expect = 1e-13 Identities = 87/108 (81%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||| ||||||||||| |||||||||||||| | || || || ||||| | Sbjct 579 ATACTTCAGGATGTCCAAAAAATCAAAATAAATGTTGATATAAAATTGGGTCTCCTCCTC 520 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | | || |||||||| |||||| ||||||| ||| ||||| |||| Sbjct 519 CAGCCGGGTCAAAAAATGAAGTATT-AAATTTCGATCTGTTAATAACA 473 >seq5451 Length=13055 Score = 123 bits (136), Expect = 6e-23 Identities = 129/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| |||| || ||||| ||| |||| ||||| ||| | || || Sbjct 546 CAAATTTATAATGTAATTGTTACTGCCCATGCTTTTATTATAATTTT-TTTATAGTAATA 604 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || || ||||| | || |||||| || Sbjct 605 CCTATTATAATTGGAGGGTTTGGAAATTGATTAGTACCATTAATATTAGGAGCTCCTTAT 664 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || |||||| | | || |||||||| |||||||||||||| ||| Sbjct 665 ATAGCATTTCCACGAATAAATAATATAAGATTTTGATTACTACCTCCT 712 >seq4984 Length=4808 Score = 123 bits (136), Expect = 6e-23 Identities = 129/168 (77%), Gaps = 1/168 (1%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| |||| || ||||| ||| |||| ||||| ||| | || || Sbjct 1077 CAAATTTATAATGTAATTGTTACTGCCCATGCTTTTATTATAATTTT-TTTATAGTAATA 1019 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || || ||||| | || |||||| || Sbjct 1018 CCTATTATAATTGGAGGGTTTGGAAATTGATTAGTACCATTAATATTAGGAGCTCCTTAT 959 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 || || |||||| | | || |||||||| |||||||||||||| ||| Sbjct 958 ATAGCATTTCCACGAATAAATAATATAAGATTTTGATTACTACCTCCT 911 >seq5402 Length=10656099 Score = 122 bits (134), Expect = 2e-22 Identities = 136/182 (75%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 225517 GTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCA 225576 || || || || |||| |||||||| | | ||| | || || || |||||||| || Sbjct 571441 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCGAGCTGCTTGCCG 571500 Query 225577 GCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTC 225636 |||||||| || || || || || || ||||| || |||||||| |||||||| |||| Sbjct 571501 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTC 571560 Query 225637 ACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTT 225696 || ||||||||||| || | ||||| || | ||||| |||||||| |||||||| Sbjct 571561 ACGTTCTCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTC 571620 Query 225697 TT 225698 || Sbjct 571621 TT 571622 >seq5396 Length=9561034 Score = 118 bits (130), Expect = 3e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 225492 ACGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGT 225551 ||| || | ||| || | ||| | |||||| || || || | || || || | | || Sbjct 8331072 ACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGT 8331013 Query 225552 TCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | |||||||| |||||||| ||||||||||| || || || || || || ||||| || Sbjct 8331012 GCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCC 8330953 Query 225612 TTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAA 225671 ||| ||||| || ||||| || ||| |||||| || || || | ||| || || | Sbjct 8330952 TTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAG 8330893 Query 225672 CGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTTTATG 225719 |||||| ||||||||||| | || || | ||| | ||||| || || Sbjct 8330892 CGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTGTG 8330845 >seq2426 Length=8015 Score = 118 bits (130), Expect = 3e-21 Identities = 138/184 (75%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 |||| |||| || |||| |||| || || ||| |||| || ||||| ||| |||| || Sbjct 3630 ATTG-GTGGGGATGACCAAATTTATAATGTAATTGTTACTGCTCATGCTTTTATTATAAT 3688 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | || || || |||| || | || || ||||||||||| || | ||||| Sbjct 3689 TTT-TTTATAGTAATACCATTTATAATTGAAGGATTTGGAAATTGATTAGTACTATTAAT 3747 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | | || ||||| |||| || |||||| | | || |||||||| |||||||||||||| Sbjct 3748 GTTAGGAGCTCCATATATAGCATTTCCACGAATAAATAATATAAGATTTTGATTACTACC 3807 Query 7716 GCCT 7719 ||| Sbjct 3808 TCCT 3811 >seq5386 Length=120146 Score = 116 bits (128), Expect = 9e-21 Identities = 128/169 (76%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| |||| ||| | ||| |||| || ||||| ||| ||| ||||| ||| | || || Sbjct 13567 CCAAATTTATAACATAATTGTTACTGCACATGCTTTTACTATAATTTT-TTTATGGTAAT 13625 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 || |||| || || || || | ||||||||| || || ||| || | || ||||| || Sbjct 13626 ACCAATTATAATTGGAGGATTTGAAAATTGATTAGTACCATTATTGTTAGGAGCTCCAGA 13685 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||| || |||||| | | || |||||||| |||||||||||||| ||| Sbjct 13686 TATAGCATTTCCACGAATAAATAATATAAGATTTTGATTACTACCTCCT 13734 >seq1452 Length=3931 Score = 102 bits (112), Expect = 2e-16 Identities = 100/128 (78%), Gaps = 1/128 (1%) Strand=Plus/Plus Query 7736 TGGTAAGATTCTTTGCGTTATATCAAATTAAACCACATACTCCACCGCTTATACAATCTT 7795 ||||||| |||| ||||| || ||||||||||||| ||||||||||| | | | Sbjct 2906 TGGTAAGGTTCTGCGCGTTGCTTCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCC 2965 Query 7796 CCGTCAGTTTCTTTGAGTTTTAACCTTGCGGTCGTAGTACTCAGGTGG-AATATTTACGC 7854 |||||| || |||||||||| |||||||||| |||| | | |||| || | || |||| Sbjct 2966 CCGTCAATTCCTTTGAGTTTCAACCTTGCGGCCGTACTCCCCAGGCGGTCAACTTCACGC 3025 Query 7855 GTTAGCTT 7862 |||||||| Sbjct 3026 GTTAGCTT 3033 Score = 89.7 bits (98), Expect = 1e-12 Identities = 85/105 (81%), Gaps = 3/105 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAAAG-GGCAG 6825 |||||| | || |||||||| ||||||||| | |||||||| | || ||| | ||||| Sbjct 3595 TGAGAGGACGACCAGCCACACTGGGACTGAGACACGGCCCA-GACTCCTACGGGAGGCAG 3537 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATG 6870 |||||| |||| || ||||||||||| |||| ||||| || |||| Sbjct 3536 CAGTGGGGAATTTTGGACAATGGGCGCAAGCCTGATCCAGCAATG 3492 >seq5433 Length=12700 Score = 86.0 bits (94), Expect = 1e-11 Identities = 120/163 (74%), Gaps = 9/163 (6%) Strand=Plus/Minus Query 7557 TTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGT 7616 ||| || || ||| |||| || ||||| || |||| ||||| | || || || | Sbjct 2693 TTATAATGTAATTGTTACTGCCCATGC--TTATTATAATTTTATA----GTAATACCTAT 2640 Query 7617 TATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGC 7676 ||| || || || || ||||||||||| || || ||||| | || ||||||||||| || Sbjct 2639 TATAATTGGAGGGTT-GGAAATTGATTAGTACCATTAATATTAGGAGCTCCTGATATAGC 2581 Query 7677 TTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCT 7719 ||||| | | || |||||||| ||||||||||||| ||| Sbjct 2580 -ATTCCACGAATAAATAATATAAG-ATTTGATTACTACCTCCT 2540 >seq5443 Length=21803 Score = 84.2 bits (92), Expect = 5e-11 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||| || ||||||||||| ||||||||||| || | || || || ||||| | Sbjct 21326 ATACTTCAGGGTGTCCAAAAAATCAAAATAAATGTTGGTATAAAATTGGGTCTCCTCCTC 21385 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA-AACA 370774 | | || |||||||| |||||| ||||||| || ||||| |||| Sbjct 21386 CGGCTGAGTCAAAAAATGAAGTATTTAAATTTCGGTCTGTTAATAACA 21433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192446812392962