Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq5165 179 3e-40 seq5396 98.7 8e-16 >seq5165 Length=2344106 Score = 179 bits (198), Expect = 3e-40 Identities = 253/352 (72%), Gaps = 10/352 (3%) Strand=Plus/Plus Query 29597 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAATCCTCAGCGGTTCC 29656 || ||| ||| |||| ||||| | ||| | ||| ||||| ||| ||||| ||| Sbjct 2001989 TTGATCACCAGCTTGGGGAAGGGCCGCGGCGTGCGCTCCAGCTGCTCCCTTAGCGGCTCC 2002048 Query 29657 ACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 29716 ||||||| || |||||||| | || |||| |||||| ||||| || || || | || Sbjct 2002049 ACGTGGTTCAGATAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCGGGCTTCAGG 2002108 Query 29717 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGCACC 29776 || || || || || ||||||| ||||| || | |||| ||||||||| |||||||| Sbjct 2002109 CCCGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACG 2002168 Query 29777 CCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAGCTCTCCGTCGCTC--- 29833 || || |||||||| | ||| ||||| |||||||| |||||||| ||| ||| | Sbjct 2002169 CCCAGGCCCATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGCTCACCG-CGCGCCTG 2002227 Query 29834 ----ACGTAAAACTGACACATGGCA-TGGCACGGAGGAAGGGCCATGAGACCCAAGTCTT 29888 || || ||||| || |||| |||||||| ||||||||||| | ||| Sbjct 2002228 CGAGACATAGAACTGGGCCA-GGCAGTGGCACGGCGGAAGGGCCATCTTTGGTATGTCGA 2002286 Query 29889 TGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGAT 29940 ||| |||||||| ||| ||||||||||||||| || || ||| |||| Sbjct 2002287 GGGGATTCCAGGCCGACATGATGATGCGCCTGTCCGAGGGATTCTTCTTGAT 2002338 >seq5396 Length=9561034 Score = 98.7 bits (108), Expect = 8e-16 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 49932 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 49991 ||| ||||| | ||| ||||||||||| | ||||| ||||||||| |||||||| || Sbjct 2096245 GTTGAACAGGACGACTCCGAGGTTGCCGCGATAGTCCTCGTCCACCACGCCGGCACCCAC 2096304 Query 49992 GTCTATAAACTTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 50051 || || || || |||| |||||| || || | |||||||| | |||||| |||| Sbjct 2096305 ATCGATGAAGTTCTTCACGGCCAGCCCTGATCGCGGAGCCACTCGTCCGTAGGAGCCCTC 2096364 Query 50052 GGGCATCTTCACGGCAAGGTCCGTCTTTACCAGGGCC 50088 ||| | || ||| ||||| ||||| || | |||| Sbjct 2096365 GGGAACCTGCACTTGCAGGTCGGTCTTCACGATGGCC 2096401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406135860520378