Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq5165 183 2e-41 seq5396 107 1e-18 >seq5165 Length=2344106 Score = 183 bits (202), Expect = 2e-41 Identities = 428/642 (67%), Gaps = 8/642 (1%) Strand=Plus/Plus Query 27091 TTTATCCTCAGTGTGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCC 27150 || ||| ||| |||| ||||| | ||| | ||| ||||| | | ||||| ||| Sbjct 2001989 TTGATCACCAGCTTGGGGAAGGGCCGCGGCGTGCGCTCCAGCTGCTCCCTTAGCGGCTCC 2002048 Query 27151 ACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGC 27210 ||||| | ||| |||||||| | ||| |||| |||||| ||||| || || || | || Sbjct 2002049 ACGTGGTTCAGATAGACGTGCGTGTCGCCCATGGTGTGCACAAAGTCGCCGGGCTTCAGG 2002108 Query 27211 CCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACC 27270 || || || || || ||||||| ||||| || | |||| ||||||||| ||||| || Sbjct 2002109 CCCGTCACATGGGCGATCATGTGGGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACG 2002168 Query 27271 CCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCAT-CGCTTAC 27329 || || |||||||| | ||| ||||| ||||| || |||||||| || ||| | | Sbjct 2002169 CCCAGGCCCATGTCGGCGCTCCTTTGGTACAGCTGGCAGGAGAGCTCACCGCGCGCCTGC 2002228 Query 27330 G-----TAAAACTGACATATGGCGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTG 27384 | || ||||| | | ||||||||| ||||| ||||| | ||| | Sbjct 2002229 GAGACATAGAACTGGGCCAGGCAGTGGCACGGCGGAAGGGCCATCTTTGGTATGTCGAGG 2002288 Query 27385 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGTCCACG 27444 || |||||||| ||| ||||||||||||||| || || ||| |||| ||| | Sbjct 2002289 GGATTCCAGGCCGACATGATGATGCGCCTGTCCGAGGGATTCTTCTTGATCGTGTCGATC 2002348 Query 27445 GCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTC-TACCCTCATGTCCGTGTACTC 27503 | | ||| ||| || | ||| | || ||| || | | || || | |||||| Sbjct 2002349 ACCTGGCGCAACTGGTCGATGCCCTTGCCGCTGTAATCGTCGTCGCAGGTGC-CGTACTC 2002407 Query 27504 TGCTCCGAAATGCCTCCATTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTGTG 27563 || || || || | ||| ||||| ||||| ||||| |||||||| || | | | | Sbjct 2002408 GGCCCCAAAGTGACGCCACTGGAAGCCGTAAACCGGGCCCAGGTCGCCGACGGCGCGCTC 2002467 Query 27564 CTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCC 27623 | | ||| ||||||| || || |||| | ||| |||||||||| | || Sbjct 2002468 CGTGTGCCCCAGTTTGTCCAGGAACTCCCTGGTGCTGTTCTCGTCCCAGATGTGCACGTT 2002527 Query 27624 CTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCAC 27683 ||| | ||| |||| || || || |||||||| | ||||||||| | Sbjct 2002528 CTTGGCCTGCAGCAGCTTGGCGTCCGTCTTGCCGGCCACGAACCAGATCAGCTCCTCGGC 2002587 Query 27684 GACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAAA 27725 ||| | | ||||| | |||||| || || |||||||| Sbjct 2002588 CACGCCGCGGAAGAAGACGCGCTTGGTGGTCAGCAGGGGAAA 2002629 >seq5396 Length=9561034 Score = 107 bits (118), Expect = 1e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 44919 GTTAAACAGTATGACGCCGAGGTTGCCCCTGTAGTCGGGGTCCACCACCCCGGCACCGAC 44978 ||| ||||| | ||| ||||||||||| | ||||| ||||||||| |||||||| || Sbjct 2096245 GTTGAACAGGACGACTCCGAGGTTGCCGCGATAGTCCTCGTCCACCACGCCGGCACCCAC 2096304 Query 44979 GTCTATAAAATTTTTCAGGGCCAGGCCGGACCTGGGAGCCACCCTGCCGTAGAGGCCCGG 45038 || || || || |||| |||||| || || | |||||||| | |||||| |||| Sbjct 2096305 ATCGATGAAGTTCTTCACGGCCAGCCCTGATCGCGGAGCCACTCGTCCGTAGGAGCCCTC 2096364 Query 45039 GGGCATCTTCACGACCAGGTCCGTCTTTACCAGGGCCCTGCCTAAGGAGGGGACCAC 45095 ||| | || ||| |||||| ||||| || | |||| | ||| || || ||||| Sbjct 2096365 GGGAACCTGCACTTGCAGGTCGGTCTTCACGATGGCCTTTCCTCGGGCCGGCACCAC 2096421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 369482327893013