Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq5395 114 3e-20 seq5396 102 2e-16 seq5238 100 7e-16 seq5402 96.9 8e-15 >seq5395 Length=2659632 Score = 114 bits (126), Expect = 3e-20 Identities = 161/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | || || || ||||| || |||||||||||||||| | || | Sbjct 975767 GAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCG 975826 Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || || || || ||||| ||||||||||| || | ||||||||| | | |||||| Sbjct 975827 TCCGTCCTCCAGCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCC 975884 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || || || || || ||| |||| | | |||| || ||| || ||||| Sbjct 975885 TCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGG 975944 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| || || ||||||||||| | ||||| || Sbjct 975945 GTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATGTT 975988 Score = 109 bits (120), Expect = 1e-18 Identities = 152/210 (72%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || || || ||||| || ||||||||||| |||| | || | || || || | Sbjct 975551 CAAG-TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCA 975609 Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 | ||||| ||||||||||| || | ||||||||| | | |||||| ||||| || || Sbjct 975610 GCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 975667 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 || || || || |||| | | | || || ||| || ||||| || || || || Sbjct 975668 GATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 975727 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||| || || ||||||||||||| |||||| Sbjct 975728 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 975757 >seq5396 Length=9561034 Score = 102 bits (112), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| ||||| || || ||||| || || | | || | |||||||| | Sbjct 8331057 CAAG-TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCA 8330999 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || |||||||| || | |||||| || | | |||||||| || || |||| Sbjct 8330998 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAA 8330939 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| | || | | || ||| || || ||||| || || || |||| Sbjct 8330938 TCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTGATGGTCTTGC 8330879 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 ||||||| ||||| ||||||| |||||| || Sbjct 8330878 CCGTGAGGGTCTTAACGAAGATCTGCATCTT 8330848 >seq5238 Length=3592495 Score = 100 bits (110), Expect = 7e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || || || || || ||||| || ||||||||||| |||| | || | || || Sbjct 2679446 GAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 2679387 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | |||||| || | | ||| || ||||| || Sbjct 2679386 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTC 2679327 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| |||| | | |||| ||| ||| || || | || || || Sbjct 2679326 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGT 2679267 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| || |||||||||| ||||| Sbjct 2679266 CTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234 >seq5402 Length=10656099 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | ||||| || ||||| || ||||||||||| |||| | || | || || Sbjct 571653 GAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTC 571712 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | |||||| || | | ||| || ||||| || Sbjct 571713 CTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTC 571772 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || ||| |||| | |||| || ||| || || | ||||| || Sbjct 571773 CTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACCTCCAAGGTAATGGT 571832 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || | |||||||| |||| ||||||||| Sbjct 571833 CTTACCAGTCAAGGTCTTCACAAAGATCTGCATTTT 571868 Score = 91.5 bits (100), Expect = 3e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 ||| || | ||| | || ||||| || |||||||||||||| | | ||| | || || Sbjct 571425 GAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTC 571484 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 || || || ||||||||||| || | |||||| || | | ||||| ||||| || Sbjct 571485 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTC 571544 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071 || || || || || |||| | | |||| || ||| || || || || || || Sbjct 571545 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGT 571604 Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || | |||||| || |||| |||||| Sbjct 571605 CTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153739151673933