Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04]
5,523 sequences; 169,378,599 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq5395 114 3e-20
seq5396 102 2e-16
seq5238 100 7e-16
seq5402 96.9 8e-15
>seq5395
Length=2659632
Score = 114 bits (126), Expect = 3e-20
Identities = 161/224 (72%), Gaps = 4/224 (2%)
Strand=Plus/Plus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||| | ||| || | || || || ||||| || |||||||||||||||| | || |
Sbjct 975767 GAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCG 975826
Query 151946 CCCATCTTCTAG--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
|| || || || ||||| ||||||||||| || | ||||||||| | | ||||||
Sbjct 975827 TCCGTCCTCCAGCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCC 975884
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || || || || || ||| |||| | | |||| || ||| || |||||
Sbjct 975885 TCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGG 975944
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || ||||| || || ||||||||||| | ||||| ||
Sbjct 975945 GTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATGTT 975988
Score = 109 bits (120), Expect = 1e-18
Identities = 152/210 (72%), Gaps = 5/210 (2%)
Strand=Plus/Plus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || || || ||||| || ||||||||||| |||| | || | || || || |
Sbjct 975551 CAAG-TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCA 975609
Query 151957 G--GCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014
| ||||| ||||||||||| || | ||||||||| | | |||||| ||||| || ||
Sbjct 975610 GCTGCTTT--CCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 975667
Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074
|| || || || |||| | | | || || ||| || ||||| || || || ||
Sbjct 975668 GATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 975727
Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||| || || ||||||||||||| ||||||
Sbjct 975728 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 975757
>seq5396
Length=9561034
Score = 102 bits (112), Expect = 2e-16
Identities = 150/211 (71%), Gaps = 1/211 (0%)
Strand=Plus/Minus
Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956
|||| || | ||| ||||| || || ||||| || || | | || | |||||||| |
Sbjct 8331057 CAAG-TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCA 8330999
Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016
| || || |||||||| || | |||||| || | | |||||||| || || ||||
Sbjct 8330998 GCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAA 8330939
Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076
| || ||||||| | || | | || ||| || || ||||| || || || ||||
Sbjct 8330938 TCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTGATGGTCTTGC 8330879
Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
||||||| ||||| ||||||| |||||| ||
Sbjct 8330878 CCGTGAGGGTCTTAACGAAGATCTGCATCTT 8330848
>seq5238
Length=3592495
Score = 100 bits (110), Expect = 7e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || || || || || ||||| || ||||||||||| |||| | || | || ||
Sbjct 2679446 GAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTC 2679387
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| || | |||||| || | | ||| || ||||| ||
Sbjct 2679386 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTC 2679327
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || ||| |||| | | |||| ||| ||| || || | || || ||
Sbjct 2679326 CTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGT 2679267
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| ||||| || |||||||||| |||||
Sbjct 2679266 CTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234
>seq5402
Length=10656099
Score = 96.9 bits (106), Expect = 8e-15
Identities = 151/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
|||||| | ||||| || ||||| || ||||||||||| |||| | || | || ||
Sbjct 571653 GAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTC 571712
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| || | |||||| || | | ||| || ||||| ||
Sbjct 571713 CTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTC 571772
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || ||| |||| | |||| || ||| || || | ||||| ||
Sbjct 571773 CTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACCTCCAAGGTAATGGT 571832
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107
|| || || | |||||||| |||| |||||||||
Sbjct 571833 CTTACCAGTCAAGGTCTTCACAAAGATCTGCATTTT 571868
Score = 91.5 bits (100), Expect = 3e-13
Identities = 148/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951
||| || | ||| | || ||||| || |||||||||||||| | | ||| | || ||
Sbjct 571425 GAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTC 571484
Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011
|| || || ||||||||||| || | |||||| || | | ||||| ||||| ||
Sbjct 571485 CTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTC 571544
Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGT 152071
|| || || || || |||| | | |||| || ||| || || || || || ||
Sbjct 571545 CTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGT 571604
Query 152072 TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
||||| || | |||||| || |||| ||||||
Sbjct 571605 CTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153739151673933
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |