Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq5238 145 7e-30 seq5402 140 3e-28 seq5396 131 2e-25 seq5170 100 3e-16 >seq5238 Length=3592495 Score = 145 bits (160), Expect = 7e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || |||||||| || | |||||| || || || ||||||||| ||||| |||||||| Sbjct 2679460 CCACCGCGTAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2679401 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| |||| || ||||||||||||||||| ||||| ||||| || || | ||| Sbjct 2679400 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 2679341 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | ||||| | ||||||| Sbjct 2679340 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 2679281 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || || || || || || || || ||||| || |||||| Sbjct 2679280 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATG 2679233 >seq5402 Length=10656099 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | |||| || || || ||||||||| ||||| |||||||| Sbjct 571639 CCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 571698 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || || |||||||||||||| ||||| ||||| || || | ||| Sbjct 571699 AGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 571758 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || |||||||||| ||| || ||||| | | |||||| | ||||||| Sbjct 571759 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACC 571818 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || || || ||||| |||| ||||| || || |||||||| || Sbjct 571819 TCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATTTT 571868 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| ||||| || ||||||||| ||||| || || || Sbjct 571411 CCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAA 571470 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| |||| |||||||||||||||||||| ||||| ||||| || || | |||| Sbjct 571471 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 571530 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||||||| ||| || ||||| | | ||||| | ||||||| Sbjct 571531 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCACC 571590 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| || || || || || |||| ||||| || || |||||||| Sbjct 571591 TCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637 >seq5396 Length=9561034 Score = 131 bits (144), Expect = 2e-25 Identities = 169/231 (73%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | ||||| |||| ||| ||||||||||||||||||||| ||| Sbjct 8331077 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 8331018 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 |||||||| | || || ||||||||||| ||||| ||||| ||||| || || | ||| Sbjct 8331017 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 8330958 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||||| ||| | || |||| || | | ||| || | || || Sbjct 8330957 ATTCCTTCTTTGTCC-TGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 8330899 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 ||| | ||| || || || ||||| || ||||| ||||| |||||||| || Sbjct 8330898 CTCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 8330848 Score = 82.4 bits (90), Expect = 7e-11 Identities = 175/259 (68%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 85787 GGGCTGCTACATTCGTATCGCACCTCGTTCCGGCCTCGCCAGCAAGCACGGTATCGACGT 85846 ||||| |||| || | || || || || || || ||| ||| || ||||| || Sbjct 2096362 GGGCTCCTACGGACGAGTGGCTCCGCGATCAGGGCTGGCCGTGAAGAACTTCATCGATGT 2096303 Query 85847 GGGCGCCGGGGTCATCGACGCCGACTACCGCGGAAACGTCATCATCGTACTCTTCAACCA 85906 ||| ||||| || | |||| ||||| ||||| ||| || |||| || |||||||| Sbjct 2096302 GGGTGCCGGCGTGGTGGACGAGGACTATCGCGGCAACCTCGGAGTCGTCCTGTTCAACCA 2096243 Query 85907 CGGCGAAGAGGATCTGGTCGTGAGGCGAGGAGACAAGGTGGCCCAGTTCATCTGTGAAAA 85966 | || | || | | |||| ||| || ||| | ||||||||||| || ||| Sbjct 2096242 CTCGGACGTAGAGTTTGAGGTGAAGCGCGGCGACCGCATCGCCCAGTTCATTTGCGAACG 2096183 Query 85967 AATCCACTATTCCGACATACAAGAAGT-GACAACTCTGGACACCACCCAACGAGGACAAG 86025 ||| |||| | || | || || ||||| ||||| |||| |||| || | | Sbjct 2096182 CATCTTCTATCCGGAACTGCAGTTGGTGGACAA-ACTGGAGGACACCGAACGTGGCGAGG 2096124 Query 86026 GAGGATTCGGGTCCACCGG 86044 |||||||||||||||| || Sbjct 2096123 GAGGATTCGGGTCCACGGG 2096105 >seq5170 Length=6624210 Score = 100 bits (110), Expect = 3e-16 Identities = 219/326 (67%), Gaps = 4/326 (1%) Strand=Plus/Minus Query 49617 GCCGATGATGCCGCAGCCGAGTCTGCTGCCAGAGTTGCCGGTGATTTTGCTCTGCTCGTC 49676 |||||||| ||||||||| | | | || | ||| || ||| |||||| |||||| Sbjct 512636 GCCGATGACGCCGCAGCCAATGCGGGCACCTGCGTTTCCCGTGGACTTGCTCAGCTCGTG 512577 Query 49677 GTCGCCCAGGCCAAAGTCGTCCTCCATGGCGTGCACCACGATGCTGCGCCCGAGAATGTT 49736 | | ||| |||| | || || | |||||| ||||| | | ||||||||| ||| | Sbjct 512576 GCCACCCTGGCCGAGATCATCGGCATCGGCGTGGACCACAACGGTGCGCCCGATGATGCT 512517 Query 49737 GTGCGGGCCGAACAGCGACAGCATCGCGTCAAACGTGTCGAACAGGGT--GACGGTCGAG 49794 || | ||||||||||| | | ||| ||| ||| || | ||| ||| ||| | Sbjct 512516 GTCGGCGCCGAACAGCGTGATCTTCGAGTCGGTGATGTTGACCTTGGTGGGACAGTC--G 512459 Query 49795 CCGTCCGAGCACACGTTGCCCAGATCGCCGAGGTGACGCCGCGGGCTCGCGGGACCGCCG 49854 ||| | | ||||||||| || || |||||||| | | |||||| | ||| Sbjct 512458 CCGGTGGCCTCGATGTTGCCCAGGTCTCCCAGGTGACGGTTCTCGTCGGCGGGAGCTCCG 512399 Query 49855 TGCGGCTGCCCGAACGGGTTCAGGTGCTCGCCTGCTGACGTGCACCCGTTCGAGGTGTCG 49914 ||| || ||| | || || | |||| || | ||| |||| ||||| | | |||| Sbjct 512398 TGCTCCTTGCCGTAGGGATTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTTGTCC 512339 Query 49915 CCGAATTCGTGGATGTGTATACCGTG 49940 ||||| ||||| | ||| | ||||| Sbjct 512338 CCGAACTCGTGTACGTGGAATCCGTG 512313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462272083687600