Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq5403 91.5 3e-13 seq5073 91.5 3e-13 seq5063 91.5 3e-13 seq5059 89.7 1e-12 seq5181 86.0 1e-11 >seq5403 Length=2915140 Score = 91.5 bits (100), Expect = 3e-13 Identities = 116/157 (74%), Gaps = 2/157 (1%) Strand=Plus/Plus Query 230449 ATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTT 230508 || ||||||||| || | ||| ||| |||||||||||||| || ||||| | | Sbjct 122166 ATCGGCATGAACTGCGACTTGATGTCACAATACATCGAATTCGTTGCGGACCGGCTACTG 122225 Query 230509 GTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATTT-ATGGAGCT 230567 || | || || || |||| | |||||| | ||||| ||||| |||| |||||| | Sbjct 122226 GTAGAGCTGGGCGTCGGGAAAATCTACAACACCAAGAA-TCCTTTCAATTTCATGGAGAT 122284 Query 230568 CATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAG 230604 || ||||| | ||||||||||||||||| |||||| Sbjct 122285 GATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAG 122321 >seq5073 Length=2625208 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 303013 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 302954 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 302953 CCCCACGTTGGGC 302941 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 781414 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 781355 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 781354 CCCCACGTTGGGC 781342 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 781789 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 781730 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 781729 CCCCACGTTGGGC 781717 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 782259 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 782200 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 782199 CCCCACGTTGGGC 782187 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 782628 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 782569 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 782568 CCCCACGTTGGGC 782556 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 301916 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 301857 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 301856 CCCACGTTGGGC 301845 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 302477 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 302418 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 302417 CCCACGTTGGGC 302406 >seq5063 Length=337993 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 91412 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 91353 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 91352 CCCCACGTTGGGC 91340 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 115209 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 115268 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 115269 CCCCACGTTGGGC 115281 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 120141 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 120200 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 120201 CCCCACGTTGGGC 120213 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 110632 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 110691 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 110692 CCCACGTTGGGC 110703 >seq5059 Length=3196756 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 177666 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 177725 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 177726 CCCACGTTGGGC 177737 >seq5181 Length=2482950 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 61353 CTAGGAAACATAGACTCTAAAAGAGATTGGGGATATGCGGAAGATTATATCGAGGCTATG 61412 || ||||| ||||||||||| | || |||||| |||| ||||| | ||||| ||| Sbjct 2114898 CTGGGAAATCTAGACTCTAAACGCGACTGGGGACATGCTAGCGATTACGTAGAGGCCATG 2114839 Query 61413 TGGTTGATGTTGCAACAAGATACTCCAGATGACTACGTTATTGCGACTGGACAGACGACG 61472 ||| |||||||||| | ||| | || |||||| ||||| || |||||| | ||| Sbjct 2114838 TGGATGATGTTGCAGCGTGATTCGCCCTCTGACTATGTTATCGCCACTGGAGAAACGCAC 2114779 Query 61473 AGTGTCCGTGAATTCGT 61489 ||||| || || || || Sbjct 2114778 AGTGTTCGCGAGTTTGT 2114762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057749456465000