Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5213 134 1e-26 >seq5213 Length=770604 Score = 134 bits (148), Expect = 1e-26 Identities = 204/283 (72%), Gaps = 8/283 (3%) Strand=Plus/Minus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||| || ||||||||||| || | | ||||||||||| | |||| |||| ||| Sbjct 538626 TTCATGTAGCGTATCTTTCCAAAGATAGATCGTTCCTTCCATCCCATGTCATGGATTCCC 538567 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTA-ACTCGTATTT 119901 | | || ||| | ||| ||||| || || ||||| || ||| || | ||| ||| || Sbjct 538566 CCGATGGACCACATGCACCCCACATAACCATTGGGGTCTCGTCCGTCCAGACT-GTACTT 538508 Query 119902 ATCGTTTAAGTAGATACAGACG--CTTAACGCACTT-TCAGGAGTCTCGCTCCATTCCAG 119958 ||| || ||||||| | || || | | || ||||||||||||||||| || || Sbjct 538507 ATCATT-AAGTAGAAT--GGCGTACTCCAGGGCCTGCTCAGGAGTCTCGCTCCACTCGAG 538451 Query 119959 TAtttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTG 120018 || ||||||||||||||||| || | | | || |||||||| || ||||| || | ||| Sbjct 538450 GATCTTTTTAGCCCAGTACATGCGCAGGAAGCCGTGCATTTTGCCCTCACGTACTAGTTG 538391 Query 120019 AAGTTGTGCGGCGTTCCATAAGGGATCGTGTGTACGGGCGTGT 120061 ||||| || | ||||| | | |||| ||| |||| ||| Sbjct 538390 TAGTTGAGCCGAATTCCACAGGTCGTCGTATGTGAGGGCCTGT 538348 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517510018740000