Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq5213 116 4e-21 >seq5213 Length=770604 Score = 116 bits (128), Expect = 4e-21 Identities = 167/228 (73%), Gaps = 8/228 (4%) Strand=Plus/Minus Query 118936 TTCATGTATCGTATCTTTCCAAATACGGTACGCTCCTTCCATGCTCTGTCGTGGAGTCCT 118995 |||||||| |||||||||||||| | | || ||||||||| | |||| |||| ||| Sbjct 538626 TTCATGTAGCGTATCTTTCCAAAGATAGATCGTTCCTTCCATCCCATGTCATGGATTCCC 538567 Query 118996 GCTACTGCCCATAGACATCCCACGTATCCGTTGGGATCTGTTCCGTCTA-ACTCGTACTT 119054 | | | ||| | || ||||| || || ||||| ||| |||||| | ||| |||||| Sbjct 538566 CCGATGGACCACATGCACCCCACATAACCATTGGGGTCTCGTCCGTCCAGACT-GTACTT 538508 Query 119055 ATCGTTTAAGTAGATACAGACG--CTTAACGCACTT-TCCGGAGTCTTACTCCATTCCAG 119111 ||| || ||||||| | || || | | || || ||||||| ||||| || || Sbjct 538507 ATCATT-AAGTAGAAT--GGCGTACTCCAGGGCCTGCTCAGGAGTCTCGCTCCACTCGAG 538451 Query 119112 TAtttttttAGCCCAGTACATACGTAAATACCCGTGCATTTTACCCTC 119159 || ||||||||||||||||| || | | ||||||||||| ||||| Sbjct 538450 GATCTTTTTAGCCCAGTACATGCGCAGGAAGCCGTGCATTTTGCCCTC 538403 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511379240260000