Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq5200 82.4 6e-11 seq1218 82.4 6e-11 >seq5200 Length=2197361 Score = 82.4 bits (90), Expect = 6e-11 Identities = 266/408 (65%), Gaps = 14/408 (3%) Strand=Plus/Plus Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 || ||| | ||||| | ||||| ||||| ||| | || ||||| || ||||||| | Sbjct 1469013 GGTGACTTGGGCCCGGTATACGGTTTCCAATGGCGGCACTTTGGTGCTGAATATACTACC 1469072 Query 18849 TGTCAATCAAACTATTTACAGCAAGGA-ATCGATCAGCTGCAAACTGTTATAGATACAAT 18907 ||| | |||| | |||||| |||||||| ||| | ||||| || || || Sbjct 1469073 TGTGACGATGACTACCG-CGGCAAGGGCATCGATCAACTGAAGCAGGTTATTGACACGAT 1469131 Query 18908 TAA-AACAAACC--CAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATAT 18964 || ||||| || | || ||||| || || || ||| | |||||||| ||| || Sbjct 1469132 CAAGAACAATCCTTCGGAT---CGACGTATCATCATGTCGGCGTGGAATCCGCTGGACAT 1469188 Query 18965 CCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACG---- 19020 || |||| | | || || || ||| || ||||||||| || | | | Sbjct 1469189 TCCAAAGATGGCATTGCCCCCGTGCCACTGCTTGGCTCAGTTTTATGTCTCTCAGGAGCG 1469248 Query 19021 --GTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTT 19078 | ||| | |||||||| | || || || | || |||||| | || || || || Sbjct 1469249 TGGCGAACTCTCCTGCCAGCTGTATCAACGAAGTGCCGACATGGGCTTGGGAGTGCCCTT 1469308 Query 19079 CAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAAC 19138 ||||||||| || || || | ||||| || | || ||||| || || || || | Sbjct 1469309 CAACATTGCCTCCTACGCCCTGTTGACCTATATGATTGCTCATGTCACTGGTCTGAAGCC 1469368 Query 19139 CGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCA 19186 || || || |||| || ||||| || | ||| ||||| | ||||| Sbjct 1469369 TGGTGACTTTGTTCACACCATGGGAGACACGCATGTTTACCTAAATCA 1469416 >seq1218 Length=8613 Score = 82.4 bits (90), Expect = 6e-11 Identities = 203/306 (66%), Gaps = 4/306 (1%) Strand=Plus/Plus Query 18889 AAACTGTTATAGATACAATTAAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTT 18948 ||| ||| || || || ||||| | || ||||| ||||||||||| || | | Sbjct 1794 AAAATGTGATTGAAACCATTAAGAATAATCCAGATTCAAGACGAATGATTGTAAGTGCCT 1853 Query 18949 GGAATCCAAAGGATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATG--TCAGTT 19006 |||||||| | || || |||| ||| ||||| ||| || || ||| ||| || Sbjct 1854 GGAATCCAGAAGACATTGGAAGTATGGCACTCCCTCCGTGT--CATGTAATGTTTCAATT 1911 Query 19007 TTACGTTGCAAACGGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCT 19066 ||||||| |||| || | ||||| | || ||| | || || || ||| Sbjct 1912 TTACGTTAACGACGGAAAACTGAGTTGCCAGTTGTATCAGCGGAGTGGCGACATTTTCCT 1971 Query 19067 TGGGGTACCGTTCAACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTAC 19126 ||| || ||||| ||||| ||| | ||||| ||| | || || || | || | | Sbjct 1972 TGGAGTTCCGTTTAACATCGCTAGTTATGCTCTTTTGACTAACTTAATTGCAAAAGAGGT 2031 Query 19127 AGGACTTAAAACCGGAGATTTAATTCATACAATGGGGGATGCACATATTTACTTGAATCA 19186 ||| ||| | |||| ||||| ||||||| | || ||||| || |||||| ||||| Sbjct 2032 AGGTCTTGAGCCCGGTGATTTTGTTCATACTCTAGGAGATGCTCACATTTACAGTAATCA 2091 Query 19187 TATAGA 19192 ||| || Sbjct 2092 TATTGA 2097 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399477220747500