Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq5200 114 9e-21 >seq5200 Length=2197361 Score = 114 bits (126), Expect = 9e-21 Identities = 201/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Minus Query 101714 TCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCAA 101773 ||||| || || || | ||| || |||||| ||| |||||||||||||||||| | Sbjct 1469395 TCTCCCATGGTGTGAACAAAGTCACCAGGCTTCAGACCAGTGACATGAGCAATCATATAG 1469336 Query 101774 GTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCTT 101833 || || || | ||| |||||||| || |||||||| || ||||| || || || | Sbjct 1469335 GTCAACAGGGCGTAGGAGGCAATGTTGAAGGGCACTCCCAAGCCCATGTCGGCACTTCGT 1469276 Query 101834 TGATACAGTTGACAGGAAAGCTTTCCA------TCACAGACATAAAATTGACTTAATACA 101887 |||||||| || ||||| || | ||| | | |||||||||| ||| || Sbjct 1469275 TGATACAGCTGGCAGGAGAGTTCGCCACGCTCCTGAGAGACATAAAACTGAGCCAAGCAG 1469216 Query 101888 TGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATC 101947 || || || ||||| |||| || |||||||| |||||| || |||| | || Sbjct 1469215 TGGCACGGGGGCAATGCCATCTTTGGAATGTCCAGCGGATTCCACGCCGACATGATGATA 1469156 Query 101948 CTTCTATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTC 102000 | || ||| | ||| || | || || || ||||| | ||| || | ||| || Sbjct 1469155 CGTCGATCCGAAGGATTGTTCTTGATCGTGTCAATAACCTGCTTCAGTTGATC 1469103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361226984880500