Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5218 462 3e-125 seq5403 125 8e-24 >seq5218 Length=3038582 Score = 462 bits (512), Expect = 3e-125 Identities = 1243/1885 (66%), Gaps = 32/1885 (2%) Strand=Plus/Minus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 |||||| | || || ||||||| || || || || || || | ||||||||||| Sbjct 2802894 CTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTCC 2802835 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| ||||| |||| ||| ||||| || ||| || || ||| | || Sbjct 2802834 GGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTGG 2802775 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 ||||| | ||||||||| | || || || ||||| || || || || | ||||| || Sbjct 2802774 CTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGGC 2802715 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAA---CTCGCTTAAT 53034 |||||| || | | || || |||||||||| ||||| |||| |||| | Sbjct 2802714 CATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGG---AC 2802658 Query 53035 ATCTTCTGGAAG-GTTTG--TATTCTGAATAGATCCACCATCTACC-ATAATCCTATTCT 53090 | || ||||| | || |||| ||||| ||||| || || || ||| ||||| Sbjct 2802657 CTTTTGTGGAATTGATTCAATATTTTGAATGGATCC-CCTGCTGGATATGATCTGATTCT 2802599 Query 53091 TGATCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTA 53150 | || ||||| | ||| || | ||| || ||| | || || | ||| | || || | Sbjct 2802598 TCATGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCA 2802539 Query 53151 CTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAG 53210 |||| || || ||||| | ||| | | || |||||||| | ||||| || || | | Sbjct 2802538 CTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGG 2802479 Query 53211 ACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAAC 53270 | || ||||| |||| |||||||||||| ||||| || ||||| || |||||||| | Sbjct 2802478 ATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGG 2802419 Query 53271 TATTTCTAAGACCGTATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCG 53330 ||||||| || | | || |||| || || ||| || ||| | ||||||||| | Sbjct 2802418 AGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCCCAAAGATCTG 2802359 Query 53331 ACGGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGC-GTACGATCCTACA 53389 ||| || ||||| || |||||| | | || |||| || Sbjct 2802358 TCGGCGTTTTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACT-TCCTTCA 2802300 Query 53390 TATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAA 53449 || || || || | || ||| | | || ||||| ||||| || || | || || | Sbjct 2802299 TAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAG 2802240 Query 53450 TAAATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGATA 53508 ||||||||||| ||||||| | |||| || || || ||| ||| || | ||||| Sbjct 2802239 TAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTG-GCCTCCTCGCTTTCGTAGGGATA 2802181 Query 53509 ATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCT 53568 | | ||||| | |||||| || | || ||||| || || || ||||| | ||| || Sbjct 2802180 ACGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCT 2802121 Query 53569 CTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAG 53628 ||| || | | || || || | || ||| | || |||||||| || |||||||| Sbjct 2802120 TAAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAG 2802061 Query 53629 GTTTCTGACAATTA-CTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA 53687 ||||||| | | ||||| || ||||| || || || ||| || | ||| Sbjct 2802060 GTTTCTGGCCACCGTCTTTGTG-ACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTG 2802002 Query 53688 ---TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCAT 53744 | ||||||||||| | || || ||||||| ||| ||||| || | ||| | | Sbjct 2802001 GCGTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCG 2801942 Query 53745 CCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTT 53804 | || | | || || ||||| |||||||| || || ||||| || | || |||| Sbjct 2801941 AAGAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTT 2801882 Query 53805 GATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCT 53864 | || |||||| ||| ||||| ||||| | || ||| | || | ||||| || | | Sbjct 2801881 GGTTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTT 2801822 Query 53865 GGGATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATA-GATTTGTATCTCTTT 53923 | || || || || || ||| | | | || |||| | | |||| || | Sbjct 2801821 GCGACTCAATGATGGCGAACCACAAGGACTGTGCTTTTACAGTTCGGTTTGCGCGTCCCT 2801762 Query 53924 TCTCTTTCGTATAGTGTATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCA 53983 || || ||||| ||| | ||||||||| || ||||| |||| | | |||| Sbjct 2801761 CCTGTT-CGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCCA 2801703 Query 53984 GGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAG 54043 || |||| | ||||| | | |||||| || | | ||| |||||||||||| ||| Sbjct 2801702 GGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAG 2801643 Query 54044 AGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGT 54102 ||||| || ||||| || || ||| || | ||| | || || ||| || || || || || Sbjct 2801642 AGATCTGGTATCCACAGGGC-ATAGAACAAATCACGGGCTCGATGCTCTTCCTTGCCAGT 2801584 Query 54103 ATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGT 54162 |||||| ||||| || || ||| | | || ||| |||||||| || || | || |||| Sbjct 2801583 ATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGC 2801524 Query 54163 CATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAAC 54222 | |||| ||||| ||| || |||||||| | |||| || ||| ||| | || Sbjct 2801523 AAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTAAAGAC 2801464 Query 54223 TCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACT 54282 ||||| ||| |||| | ||||||||| | || ||||| ||| | || | | || | Sbjct 2801463 TCTCAGCATAGGAACCAGACCATTGGAAGTGCCGTTGGTTCCGCAAATGGAAGTACCCTT 2801404 Query 54283 GGCACGAATATTACTAATTGA----TAGACCTATCCCCCCTGCCATTTTAGAGATTAATG 54338 ||||||||| ||| || ||||| || || ||||| || ||||| | | Sbjct 2801403 TGCACGAATA----CAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATCATGG 2801348 Query 54339 CGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAA 54398 ||||| | | | | | |||| ||||| || || ||||| | || |||| Sbjct 2801347 CGCATTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTCATGGTCAGGAGAA 2801288 Query 54399 AACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCG 54458 |||| || | ||| ||||| | || | || ||||| || || |||||||||| Sbjct 2801287 AACAAGACGATAGCTGGGGACGATTTGTGGCAGCGGCAAATAGCGTTGGCGAAGCGTGCG 2801228 Query 54459 TAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGAT 54518 | || | || ||||| | ||||||||||| | || | || || || | || Sbjct 2801227 TGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGATGTCTTCTCCAT 2801168 Query 54519 GAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTA 54578 | ||||| | ||| || ||||| | ||||||||| |||| || |||| || || | Sbjct 2801167 GGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGATTTTACCATTGA 2801108 Query 54579 TTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTC 54638 |||| || | ||| || |||| ||| || || ||||| |||||||| |||||| | Sbjct 2801107 TTTTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGTAACCAAAGTCAC 2801048 Query 54639 GTTCGTAAATAATAACTGAGTTGAG 54663 | || ||||| ||| ||||| || Sbjct 2801047 GATCATAAATTATAGACGAGTTCAG 2801023 >seq5403 Length=2915140 Score = 125 bits (138), Expect = 8e-24 Identities = 356/545 (65%), Gaps = 3/545 (1%) Strand=Plus/Minus Query 24138 GCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCG 24197 || || |||||||| || || ||||| || || | |||||||| || || || || Sbjct 122047 GCAAAGTCGCAGTGAAGGCCTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCA 121988 Query 24198 GGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATT 24257 ||||| || || ||||| || ||||| || ||||| || || || ||||| ||| Sbjct 121987 GGCATCAGACCTCGCTTCTTCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATT 121928 Query 24258 CCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCG--CTGTCATGT-ATC 24314 || ||||| || ||||| || || | | |||||| | ||| || | | | ||| Sbjct 121927 CCCTCTACGGCAGCAAAAGCGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATC 121868 Query 24315 CACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAG 24374 || | |||||||||||||| || || ||||| || || || ||||| || Sbjct 121867 CAGGCCAGCGCCCAATCGGCCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAAC 121808 Query 24375 AGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCC 24434 || || | | | |||| ||| || || || || | | ||| ||||| ||| Sbjct 121807 AGGTACTCGCGCTGGTGGGGATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCC 121748 Query 24435 GAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGT 24494 || || | |||||| ||||| ||||| || || || ||||| | |||||| || | ||| Sbjct 121747 GAGTGTACGTTTTCCATGGCGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACCTGA 121688 Query 24495 ACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAA 24554 || || || || || || | | ||| || || || ||||| || || ||||| Sbjct 121687 ACCTCCTGACTGAAGCGCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAG 121628 Query 24555 AACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG 24614 || |||| || || || || | ||| || | || | |||||| | Sbjct 121627 AAGGCCAGCACGTGGGAGATGAAGTGGCGTTCATCGTCCTTAAGGCGGTGCCAATCGGTA 121568 Query 24615 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 24674 | ||| || || | ||||| || || |||||||| || || || || |||||| ||| Sbjct 121567 AGATCCTTGGAAAGGTCCACCTCCTCGACTGTCCAGAAAGAGGCTTCAGCCTTTAAATAA 121508 Query 24675 ATATT 24679 | ||| Sbjct 121507 AAATT 121503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593680781640000