Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5200 140 4e-28 >seq5200 Length=2197361 Score = 140 bits (154), Expect = 4e-28 Identities = 246/356 (69%), Gaps = 8/356 (2%) Strand=Plus/Minus Query 145589 CAAAGTCCTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGG 145648 |||||||||| | || || || ||||||| |||| | | || ||| ||| Sbjct 1469523 CAAAGTCCTCGTAGCGAAAATCTTCAATGTCCTGCACCTGGCGTTTAATAACTAGCTTGG 1469464 Query 145649 GAAAGGGCCGGGGGCTCCTGGTC-AGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAG 145707 | ||||| || || ||| | || || || || || ||||||||||| || ||||| Sbjct 1469463 GGAAGGGACGCGG-CTCGCGTTCGAGTTGCTCCTGAAGTGGCTCCACGTGATTTAGGTAA 1469405 Query 145708 ACGTGCGCGTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCG 145767 || |||| ||| |||| | ||| | ||||| || |||| || || |||| || || Sbjct 1469404 ACATGCGTGTCTCCCATGGTGTGAACAAAGTCACCAGGCTTCAGACCAGTGACATGAGCA 1469345 Query 145768 ACCATGTAGGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCC 145827 | ||| ||||||| ||||| |||| ||| |||||||||||||| |||| |||||||| Sbjct 1469344 ATCATATAGGTCAACAGGGCGTAGGAGGCAATGTTGAAGGGCACTCCCAAGCCCATGTCG 1469285 Query 145828 CCCGAGCGCTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC------ACGTAGAACTGG 145881 | || || ||||||||||||||||| || || | | || || || ||||| Sbjct 1469284 GCACTTCGTTGATACAGCTGGCAGGAGAGTTCGCCACGCTCCTGAGAGACATAAAACTGA 1469225 Query 145882 CACAGGAGGTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGC 145937 || | |||||| || |||| ||||| || | |||| ||| ||||| || Sbjct 1469224 GCCAAGCAGTGGCACGGGGGCAATGCCATCTTTGGAATGTCCAGCGGATTCCACGC 1469169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590036232220000