Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5403 417 8e-112 seq5008 174 2e-38 seq5076 145 8e-30 seq5215 132 5e-26 seq5218 125 7e-24 >seq5403 Length=2915140 Score = 417 bits (462), Expect = 8e-112 Identities = 548/750 (73%), Gaps = 12/750 (2%) Strand=Plus/Plus Query 116653 AAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGA 116712 |||||| || || || |||||||| ||||||||||||||||| |||||||| | ||| Sbjct 121514 AAAGGCTGAAGCCTCTTTCTGGACAGTCGAGGAGGTGGACCTTTCCAAGGATCTTACCGA 121573 Query 116713 CTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGC 116772 ||| | ||| | || ||| | || ||||| |||||| |||||||||||||| || || Sbjct 121574 TTGGCACCGCCTTAAGGACGATGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGC 121633 Query 116773 CGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGT 116832 || ||| || || || |||||||||||||| ||||| ||| ||||||||| ||||| Sbjct 121634 TGCTTCCGATGGAATTGTAAACGAGAATCTGGTTGAGCGCTTCAGTCAGGAGGTTCAGGT 121693 Query 116833 GGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAAT 116892 | ||||| || || || || ||||| || ||||||||||| ||||| |||||||| || Sbjct 121694 CACGGAGGCTCGCTGTTTTTATGGCTTCCAAATCGCCATGGAAAACGTACACTCGGAGAT 121753 Query 116893 GTATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGA---AGCTCCGTTTGTT 116949 ||| ||||||||||| ||| | | | | | || || || |||| Sbjct 121754 GTACAGTGTACTCATCGACACTTACATTAGAGATCCCCACCAGCGCGAGTACC---TGTT 121810 Query 116950 GAACGCCATCGAGACGATGCCGTGCGTCAAAGAG-AAGGCCGAGTGGGCGCTGCGCTGGA 117008 || ||||| || ||||||||| ||| ||| | |||||||| ||||||||| ||||| Sbjct 121811 CAATGCCATTGAAACGATGCCG-GCGGTGAAGCGCAAGGCCGATTGGGCGCTGGCCTGGA 121869 Query 117009 TCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || || || || ||| ||| || |||||| | | || || || ||||| ||||| Sbjct 121870 TCTCCT-CAAAGTCTGCCAACTTTGGAGAGCGCATCATCGCTTTTGCTGCCGTAGAGGGA 121928 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| || || |||||| |||| || ||||| ||||| || || || ||||| Sbjct 121929 ATCTTCTTCAGCGGTAGCTTCGCCTCCATCTTCTGGCTGAAGAAGCGAGGTCTGATGCCT 121988 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || ||||| ||| ||||||||| |||||||||||||| || || || |||||||||| | Sbjct 121989 GGTCTGACCTTCTCCAACGAGCTGATCTCCAGGGACGAAGGCCTTCACTGCGACTTTG-C 122047 Query 117188 TGT-TTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGCGCGTCAGGGAGATCGT 117246 ||| | ||||| ||||| | || ||| || | || |||| ||| |||||| | Sbjct 122048 TGTGCTAATGTTCCAGCATCTCGTCCAGAAGCCACGTCGGGAGCGCATCATCGAGATCAT 122107 Query 117247 CACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCT 117306 | |||||| || | ||| || ||| |||||||| || || |||| ||| | || | Sbjct 122108 CCGCGACGCTGTGGACATTGAACAGGAGTTCCTCACAGACGCCTTGCCCGTGAATTTGAT 122167 Query 117307 GGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCT 117366 || | || ||||| |||||| ||||||||||| ||||| || ||| |||| ||| | Sbjct 122168 CGGCATGAACTGCGACTTGATGTCACAATACATCGAATTCGTTGCGGACCGGCTACTGGT 122227 Query 117367 CGAGCTGGTCGGCGCCAAGCACTACAACAC 117396 ||||||| || || || ||||||||| Sbjct 122228 AGAGCTGGGCGTCGGGAAAATCTACAACAC 122257 >seq5008 Length=644625 Score = 174 bits (192), Expect = 2e-38 Identities = 178/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| || || Sbjct 342762 ATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTCC 342821 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| |||||| || || | ||||| |||||||||||| | || || Sbjct 342822 GATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 342880 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| ||||| |||||||| |||| |||||||| ||||||||| Sbjct 342881 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAA 342940 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| |||| ||||| | |||||||| || | ||||||| Sbjct 342941 CATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGCGTCTGCGCGGCGGCG 342990 Score = 163 bits (180), Expect = 3e-35 Identities = 162/207 (78%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 ||||||||||| ||||| || || || || ||||| ||||||||| |||| ||||| || Sbjct 342531 AAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 342590 Query 40747 ACCGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | | | |||| |||||| || || | ||||| ||||| |||||| | || Sbjct 342591 TCCGATACCATCGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGA 342649 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| |||||||| |||| |||||||| |||||| Sbjct 342650 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTA 342709 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| |||| || || Sbjct 342710 CAACATCCAGAAGGAGTCCACCCTCCA 342736 >seq5076 Length=596799 Score = 145 bits (160), Expect = 8e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| ||||| ||||||||| |||| || || | | Sbjct 35090 ATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCTTCG 35149 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | |||||||| || |||||| | || ||| Sbjct 35150 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGATCAG 35209 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| |||||||| || | |||||||| ||||||||| Sbjct 35210 CAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAAC 35269 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTG 40899 |||||||||||| | || |||||||| ||| Sbjct 35270 ATCCAGAAGGAGTCGACCCTGCATCTGGTG 35299 >seq5215 Length=2160492 Score = 132 bits (146), Expect = 5e-26 Identities = 155/207 (75%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || ||||| | || || |||||||||||| | || || || || Sbjct 1797738 AAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGGAGCCC 1797679 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||| | | | | |||| |||| | || || | ||||| |||||||||||| | || Sbjct 1797678 TCCGATACCATCGAGAACG-TCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGA 1797620 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| || | |||| ||| || || ||||| || || | ||||||||| |||||| Sbjct 1797619 CCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTA 1797560 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| | || || || Sbjct 1797559 CAACATCCAGAAGGAGTCGACCCTTCA 1797533 Score = 123 bits (136), Expect = 3e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || || | || || || |||||||| | || ||||| | | Sbjct 1797508 AATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTC 1797449 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | | |||| | |||| || || | ||||| |||||||||||| | |||| Sbjct 1797448 CGACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACC 1797390 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| || || ||||| || || | ||||||||| |||||||| Sbjct 1797389 AGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGACTACA 1797330 Query 40868 ACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||| | || || || Sbjct 1797329 ACATCCAGAAGGAGTCGACCCTCCA 1797305 Score = 113 bits (124), Expect = 5e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | || || || |||||||| | || ||||| | || Sbjct 1797279 ATGCAGATCTTCGTGAAGACCTTGACTGGTAAGACCATCACTCTGGAGGTCGAGCCTTCC 1797220 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | |||| || || | ||||| |||||||||||| | ||||| Sbjct 1797219 GACACCATTGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCA 1797161 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | |||| ||| || || ||||| || || | ||||||||| ||| ||||| Sbjct 1797160 GCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCGATTACAA 1797101 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 |||||| |||||| | || || || Sbjct 1797100 CATCCAAAAGGAGTCAACTCTTCA 1797077 >seq5218 Length=3038582 Score = 125 bits (138), Expect = 7e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| |||||||| | || |||||| | Sbjct 2718500 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAACCG 2718441 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | ||| |||| | || |||| |||||||| || || || | || Sbjct 2718440 TCGGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 2718381 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | || |||||| ||||| Sbjct 2718380 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACCCTCTCTGACTAT 2718321 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||| ||||||||| | || |||| | ||| ||||| Sbjct 2718320 AACATTCAGAAGGAGTCTACCTTGCACTTGGTGCTGCGC 2718282 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515183778680000