Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq5200 127 1e-24 >seq5200 Length=2197361 Score = 127 bits (140), Expect = 1e-24 Identities = 273/406 (67%), Gaps = 8/406 (2%) Strand=Plus/Minus Query 97056 GTGATTCACATAAATGTGAGCATCTCCTAAAGTGTGAATAAATTCTCCAGGAACTAAATC 97115 |||||| | |||| || | ||||| | ||||||| ||| || ||||| | | | Sbjct 1469417 GTGATTTAGGTAAACATGCGTGTCTCCCATGGTGTGAACAAAGTCACCAGGCTTCAGACC 1469358 Query 97116 AGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGCACCCC 97175 ||||||||| || |||||| | || || || | ||| |||||||| || ||||| || Sbjct 1469357 AGTGACATGAGCAATCATATAGGTCAACAGGGCGTAGGAGGCAATGTTGAAGGGCACTCC 1469298 Query 97176 TAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCA------TCACA 97229 | ||||| || || || |||||| | ||| ||||| || | ||| | | | Sbjct 1469297 CAAGCCCATGTCGGCACTTCGTTGATACAGCTGGCAGGAGAGTTCGCCACGCTCCTGAGA 1469238 Query 97230 CACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGAC 97289 |||||||||||| ||| || || |||||||| ||||| ||||||| || | Sbjct 1469237 GACATAAAACTGAGCCAAGCAGTGGCACGGGGGCAATGCCATCTTTGGAATGTCCAGCGG 1469178 Query 97290 ATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTTTGTGTGTATGGTATTAATTAT 97349 |||||| || |||| | || | || ||| | || || | | || || | ||| | Sbjct 1469177 ATTCCACGCCGACATGATGATACGTCGATCCGAAGGATTGTTCTTGATCGTGTCAATAAC 1469118 Query 97350 CTGCTTTAATTGATCAACGCCTTCTCCACCATAATTGTGCTTAAGACCTTG-ATATTCTG 97408 |||||| | |||||| | ||| | || | || | | | | | | | | |||||| | Sbjct 1469117 CTGCTTCAGTTGATCGATGCCCTTGCCGCGGTAGTCAT-CGTCACAGGTAGTATATTCAG 1469059 Query 97409 CTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCC 97454 | ||||| |||| ||||||||| || || || || || | ||| || Sbjct 1469058 CACCAAAGTGCCGCCATTGGAAACCGTATACCGGGCCCAAGTCACC 1469013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346760754635000