Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5218 230 2e-55 seq5215 138 1e-27 seq5008 134 1e-26 seq5076 105 6e-18 >seq5218 Length=3038582 Score = 230 bits (254), Expect = 2e-55 Identities = 748/1138 (66%), Gaps = 49/1138 (4%) Strand=Plus/Minus Query 133221 TGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAAC 133280 |||||||||||||| |||||||| | ||| |||||||| ||| | ||| | || | Sbjct 2802548 TGGTTGACCACTTGGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAG 2802489 Query 133281 GGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCC 133340 || ||||| |||||||| || || | || || || |||| || |||||||| ||| Sbjct 2802488 GGCTCGAAGGATTCGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCC 2802429 Query 133341 ACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCC 133400 ||||| | |||||||| || || | || || ||| || || | ||||||||| Sbjct 2802428 ACCAAAAGGGAGTTTCTAACTCCATGTTTTTTGATGGACTCCTTCAGACCTTTCCAGTCC 2802369 Query 133401 CACAGAT-TGTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAAT 133459 || |||| ||| || | || | | | |||||| | ||| ||| Sbjct 2802368 CAAAGATCTGTCGGCGTTTTATCCCACAT-------GTCGTACT---------GCAGAAT 2802325 Query 133460 ACCCCTGCTCACCGGACTGTCCGTG-TACGATTCATAGGGTCCGTTGATTTTGGCCAGCT 133518 ||| | || |||||||| ||| | || | |||||||| |||| ||| |||||| | Sbjct 2802324 TCCCTTACTGACCGGACT-TCCTTCATAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTT 2802266 Query 133519 CGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACC 133578 |||| || || |||| || |||||||||||||||| ||| | ||| | || | Sbjct 2802265 CGCAACTGGCTTCCAGGGCTCCAAAGTAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGC 2802206 Query 133579 TGGCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCCTGT 133637 |||| || ||||| ||||||| ||| || | ||||| | |||||| |||| |||||| Sbjct 2802205 TGGCCTCCTCGCTTTCGTAGG-GATAACGCATAAGAATCAGCGCGTCAGCCAGACCCTGA 2802147 Query 133638 ATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACT-CGGCCGTGGGATA 133696 | ||||| ||| || || ||||| || |||| | ||| | || |||| ||||| || Sbjct 2802146 ACGCCGATGCCAATAGGACGATGCCTTAAATTGGACTTCTTGGCCTCCGGCAGTGGG-TA 2802088 Query 133697 GTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAG 133756 ||| | || || ||||| ||||| || | | | | | || || | | || || Sbjct 2802087 AAAGTTTATATCTATTATCTTATTGAGGTTTCTGGCCACCGTCTTTGTGACCTCCTTAAG 2802028 Query 133757 CAAAACATAGTCAAATGTCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGC 133816 | ||||| |||| || | | |||| || || |||||| || || || Sbjct 2802027 CTTTTTGAAGTCATATGTTTT--CTCTGGCGTC-ACAAACATGTTGAGAGCGATCGATGC 2801971 Query 133817 TAGATTACAAACGGCCGTCTCGT-TCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGT 133875 | ||| ||||| || |||||| || | | |||| ||| || || | ||| || | Sbjct 2801970 CAAATTGCAAACTGCAATCTCGTCGGGCGAAG-AGTACTCGACAATTTCCGTGCACAGAT 2801912 Query 133876 TGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGT 133935 | |||||||| |||||||||| || | ||| ||||| ||||| |||||| Sbjct 2801911 TACTGCATTTAATGGTGCCCACGTTCTGTTGGTTGCTCTTTCGGTTGCACGCGTCCTTGA 2801852 Query 133936 ATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGATAAATCTAA--ACAA-GT 133992 | |||||||| || ||| || || || | | ||| | ||| | || |||| | Sbjct 2801851 AGAGCATGTAAGGATTGCCAGTCTCCACTTGCGACTCAATGAT--GGCGAACCACAAGGA 2801794 Query 133993 CTCTCGCCTTCAC-CTGCCTTT----CGTACACTTGAGCATTTTCGTAGTCGCAATATCT 134047 || | || || || | | || ||| | || | | |||||| | |||| Sbjct 2801793 CTGT-GCTTTTACAGTTCGGTTTGCGCGT-CCCT----CCTGTTCGTATTTCACATATAG 2801740 Query 134048 CATTTCGAAATCAAAACCGTATTTGTCGGCGAGGTCAGGGCATGTTTTGTGAGAGAATAG 134107 | |||| || ||| || | || || |||||||| | | | || |||| || Sbjct 2801739 CTTTTCAAACTCATCGCCCCACACATCATGAAGTCCAGGGCATTTGTGGGGACAGAAAAG 2801680 Query 134108 CGACCACATTTGATTGTTCTTTACGCGTTTCATGAATAGATCGGGAATCCACAGGCCGAG 134167 |||||| | |||| || || ||||||||||| ||||| || ||||||||| | Sbjct 2801679 CGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAAGAGATCTGGTATCCACAGGGCATA 2801620 Query 134168 CATTAAATCGCGAGCTTTAGTGTCTTCGGAGCCCATGTTGCGTCTCAA-GTTGAGAAACT 134226 | ||||| || ||| | ||||| ||| | || | ||| || || ||||||| Sbjct 2801619 GAACAAATCACGGGCTCGATGCTCTTCCTTGCCAGTATT-CTTCTTAAGGTCCAGAAACT 2801561 Query 134227 CATAAATTTCCGGATGCCACGGCTCGATGTAGGCGGCGAGGGCACCTTTTCGCTT---AC 134283 || ||| |||| |||||| ||||| | || ||| | ||| || ||||| || Sbjct 2801560 CAAAAACATCCGAATGCCAGGGCTCTAGATAAATGGCAAAGGCTCCCGGCCGCTTGCCAC 2801501 Query 134284 CACCCTGGTCGACGTGACGCACCATGTTGTTGAAGACTCTCAACATATTGACGAGACC 134341 ||||||| || || | || ||| |||||| |||||||||| |||| || ||||| Sbjct 2801500 CACCCTGATCCACATATCGTGCCACGTTGTTAAAGACTCTCAGCATAGGAACCAGACC 2801443 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | |||||||| || |||||||| || || | || || ||| Sbjct 2718285 CAGCACCAAGTGCAAGGTAGACTCCTTCTGAATGTTATAGTCAGAGAGGGTACGGCCATC 2718344 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| |||||||||||||| ||||| || || || ||||| Sbjct 2718345 TTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC 2718404 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || ||| || | ||||| ||| |||| |||||||| | || | || Sbjct 2718405 CTGAATCTTGGCTTTGACATTTTCGATGGTATCCGACGGTTCGACCTCAAGAGTGATGGT 2718464 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || |||||||| Sbjct 2718465 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 2718497 >seq5215 Length=2160492 Score = 138 bits (152), Expect = 1e-27 Identities = 164/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| | ||||| ||||||| Sbjct 1797527 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1797586 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | ||||||||| || || || ||||||||||||||| Sbjct 1797587 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCTTGG 1797646 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||| || | |||| ||| || | | ||| ||||| | ||| | ||||| Sbjct 1797647 ATCTTGGCTTTGACGTTCTCGATGGTATCGGAGGGCTCCACCTCCAAGGTGATGGTTTTT 1797706 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTATTCT 118748 || |||| ||||| ||||| ||||||| ||| ||||||| Sbjct 1797707 CCAGTCAAGGTTTTCACAAAGATCTGCATTTTGGATTATTCT 1797748 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | ||||||||| | || ||||| ||||| |||||||||||| Sbjct 1797053 CCTCCGCGCAGACGTAGCACCAAGTGAAGAGTTGACTCCTTTTGGATGTTGTAATCGGAG 1797112 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| |||||||||||| ||||| ||| |||| | ||||||||| || || || Sbjct 1797113 AGGGTGCGGCCATCCTCGAGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGG 1797172 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | || | |||||| | ||||||| Sbjct 1797173 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACC 1797232 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | || || || |||| || || || || |||||||| Sbjct 1797233 TCCAGAGTGATGGTCTTACCAGTCAAGGTCTTCACGAAGATCTGCAT 1797279 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| || ||||| || || |||||||| ||| | ||||| ||||||| Sbjct 1797299 ACCAAGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCG 1797358 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||| | ||||||||| || || || |||||||||||||| Sbjct 1797359 AGCTGCTTTCCGGCGAAGATCAAACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGG 1797418 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | |||||| | ||||||||| | || | || || Sbjct 1797419 ATCTTGGCCTTCACGTTCTCAATGGTGTCGGAAGGCTCGACCTCCAGAGTGATGGTCTTA 1797478 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || || || |||||||| Sbjct 1797479 CCAGTCAAGGTCTTCACGAAGATCTGCAT 1797507 >seq5008 Length=644625 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | ||||||||||| || ||||| || || |||||||| ||| | Sbjct 342760 CCTCCGCGGAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 342701 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| |||||||||||||| || || Sbjct 342700 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 342641 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | |||| ||| || | | ||||||| Sbjct 342640 ATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACC 342581 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| ||| | || ||||| ||||| || || || ||||| ||||| Sbjct 342580 TCGAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 342534 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || ||||| | | ||||||||| || | || ||||| || || |||||||| ||| | Sbjct 342988 CCGCCGCGCAGACGCAACACCAAATGCAAAGTGGACTCCTTCTGGATGTTGTAGTCGGAC 342929 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| || || ||| |||| |||||||||||||| || || Sbjct 342928 AGGGTGCGTCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 342869 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 |||||||||||||| || || || || | |||| ||| || | | ||||||| Sbjct 342868 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCGATGGTATCGGAGGGCTCGACC 342809 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || | ||| | || ||||| ||||| || || || || ||||||||| || Sbjct 342808 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTGACGAAGATCTGCATGCCT 342758 >seq5076 Length=596799 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||| | | | ||||| || | || ||||| || || |||||||| || Sbjct 35318 TACCACCGCGCAGACGGAGCACCAGATGCAGGGTCGACTCCTTCTGGATGTTGTAGTCCG 35259 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| |||||| ||||| || || || |||| ||||||||||||||||| | Sbjct 35258 AAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATCAGACGCTGCTGATCGGGGG 35199 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || || ||||| || || || || | |||| |||||||| ||| | Sbjct 35198 GGATACCTTCTTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCAA 35139 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||||| ||| | || ||||| || || ||||| || || || ||||||| Sbjct 35138 CCTCGAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAGATTTGCATGG 35088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433801319806000