Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_002484.2 Length=56426 Score E Sequences producing significant alignments: (Bits) Value seq1188 93.3 2e-14 >seq1188 Length=7565 Score = 93.3 bits (102), Expect = 2e-14 Identities = 138/191 (72%), Gaps = 6/191 (3%) Strand=Plus/Plus Query 3816 TGAACATCAACAGCCCCGGCGGCGACGTATTCGAAGGCCTGGCCATTTACAACCTGC--T 3873 || ||||||| ||||| ||||| || || || || || ||||| ||||| |||| | Sbjct 3116 TGCACATCAATAGCCCAGGCGGTGATGTGTTTGACGGTCTGGCTATTTATG--CTGCGTT 3173 Query 3874 GCGCGAGCACAAGGGCAAGGTCACGGTGAACATCATCGGCCTGGCTGCCTCTGCCGCCTC 3933 || | |||||| ||| ||| | || | || ||||| || ||||| ||||| Sbjct 3174 GCAGGCGCACAATGGCCCGGTTTCTGTTGTGGTGGATGGTCTGGCGGCTTCTGCGGCCTC 3233 Query 3934 TTTCATCGCCATGGCGGGGGATGAAATCCGCATCGGCCGCGCC-GCCTTCCTGATGATCC 3992 ||||||||| ||||||| ||| ||| |||| |||| || ||||| || ||||||| Sbjct 3234 CTTCATCGCCTTGGCGGGTGATACCATCAGCAT-GGCCCCGAATGCCTTTCTTATGATCC 3292 Query 3993 ATAACGCCTGG 4003 |||| |||||| Sbjct 3293 ATAATGCCTGG 3303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 180429814908000