Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq5403 125 7e-24 >seq5403 Length=2915140 Score = 125 bits (138), Expect = 7e-24 Identities = 517/803 (64%), Gaps = 22/803 (3%) Strand=Plus/Minus Query 13934 TTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATT- 13992 |||||||||||||| || || || ||||| || || | ||||| |||| || ||||| Sbjct 122320 TTTTCAAAGAAGTTGGTCTTCCCGTCCAGCGAGATCATCTCCATGAAATTGAAAGGATTC 122261 Query 13993 -TGTTGACATAAACACTTTATCACAAC--CTAGTTCTAATAGTAATCTATCCGCAATGAA 14049 || || || | || || | || | || |||| |||| | ||||||| ||| Sbjct 122260 TTGGTGTTGTAGA----TTTTCCCGACGCCCAGCTCTACCAGTAGCCGGTCCGCAACGAA 122205 Query 14050 CTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTACAGGAATTATATT 14109 || || ||||| ||||| || || || ||||| || || | || || || | | Sbjct 122204 TTCGATGTATTGTGACATCAAGTCGCAGTTCATGCCGATCAAATTCACGGGCAAGGCGTC 122145 Query 14110 GGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCGTAATAATTTCATT 14169 || | || || | ||| || |||||| ||| || || ||| || || | Sbjct 122144 TGTGAGGAACTCCTGTTCAATGTCCACAGCGTCGCGGATGATC-TCG--ATGATGCGCTC 122088 Query 14170 AGAAGGAGGATATTTTA---GATGTTTAAAAATTAAACAC-GCAAAATCACAATGAAGGC 14225 | | || | | | |||| | || |||| ||| ||||| || || ||||||| Sbjct 122087 CCGACGTGGCTTCTGGACGAGATGCTGGAACATTAG-CACAGCAAAGTCGCAGTGAAGGC 122029 Query 14226 CCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATCAATCCTCGttttt 14285 | || || || || || ||||| || || || | || ||||||| ||||| || | Sbjct 122028 CTTCGTCCCTGGAGATCAGCTCGTTGGAGAAGGTCAGACCAGGCATCAGACCTCGCTTCT 121969 Query 14286 ttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACG 14345 | | ||| || || | ||||| ||| ||||| |||||||| || |||||||| | Sbjct 121968 TCAGCCAGAAGATGGAGGCGAAGCTACCGCTGAAGAAGATTCCCTCTACGGCAGCAAAAG 121909 Query 14346 CTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAG 14405 | || | || |||||||| || || || ||||| ||||| || | Sbjct 121908 CGATGATGCGCTCTCCAAAGTTGGCAGACTTTGAGGAGATCCAGGCCAGCGCCCAATCGG 121849 Query 14406 AtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAG 14465 || || | ||| |||||||| ||||| || | | || || | | Sbjct 121848 CCTTGCGCTTCACCGCCGGCATCGTTTCAATGGCATTGAACAGGTACTCGCGCTGGTGGG 121789 Query 14466 TACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAG 14525 | | |||||| || || || |||| || ||||| || ||||||| ||||||||| | Sbjct 121788 GATCTCTAATGTAAGTGTCGATGAGTACACTGTACATCTCCGAGTGTACGTTTTCCATGG 121729 Query 14526 CTATCTGAAAACCATAAAAACATCTAGCTTC--TGACCATTGTACCT-CTGAGTAAAATC 14582 | || || || ||||||||||| | ||| || ||||| || |||| |||| | || | Sbjct 121728 CGATTTGGAAGCCATAAAAACAGCGAGCCTCCGTGACC--TGAACCTCCTGACT-GAAGC 121672 Query 14583 TTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCAATATGTTTT 14642 || ||| ||| || || || || ||||| ||| ||||| || |||| | || Sbjct 121671 GCTCAACCAGATTCTCGTTTACAATTCCATCGGAAGCAGCAAAGAAGGCCAGCACGTGGG 121612 Query 14643 TAATAAAGTATTGCTCTTCATTGCTGAGTTTTTTCCAATCGGCTAAATCCTTAGAAAGAT 14702 || |||| | || || | | || | |||||||| | |||||| ||||| | Sbjct 121611 AGATGAAGTGGCGTTCATCGTCCTTAAGGCGGTGCCAATCGGTAAGATCCTTGGAAAGGT 121552 Query 14703 CTACTTCATCAACTGTCCaaaaa 14725 | || || || |||||||| ||| Sbjct 121551 CCACCTCCTCGACTGTCCAGAAA 121529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482312438740000