Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5218 560 9e-155 seq5008 109 5e-19 seq5076 100 3e-16 seq5215 82.4 7e-11 >seq5218 Length=3038582 Score = 560 bits (620), Expect = 9e-155 Identities = 1277/1909 (67%), Gaps = 45/1909 (2%) Strand=Plus/Minus Query 22104 TCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGC 22163 ||||||| || |||||||| |||||||| || || || || ||||| | || ||||| | Sbjct 2802895 TCTTGTCGACGGTAAACTGAATGGCGTTGGCAGCTGGCTTTGTGCGCAAGTAGTACATTC 2802836 Query 22164 CCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCG 22223 | || || ||||| ||||| | ||| |||||||| || || | |||||||| | | Sbjct 2802835 CGGTTTTAAGACCAGCTTTCCAGGAGTAGAAATGTATGGATGTGAGCTTTCCATAGTTTG 2802776 Query 22224 GCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGG 22283 || ||| | | |||||| ||||| |||||||| |||||||| || ||||| |||| Sbjct 2802775 GCTCTGCCACATGGATATTGAAGGACTGGCTCTGATCTATAAACGCACCGCGATCTGCGG 2802716 Query 22284 CCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCT 22343 |||| || || || | || |||||||| || || ||||| || | | || || Sbjct 2802715 CCATTTTAATTGTTGATTTAACTGAGATTTCCCAAACTGTTTTGTAAAGGTCTCGGACCT 2802656 Query 22344 CTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAA 22403 | || || ||||| || | || | ||| || | || ||||||| ||| || | Sbjct 2802655 TTTGTGGAATTGATTCAATATTTTGAATGGATCCCCTGCTGGATATGATCTGATTCTTCA 2802596 Query 22404 TCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTT 22463 | ||||| ||||||| | | | |||||||| | | || |||| |||| ||||||| Sbjct 2802595 TGTCATCGTCCCACAAATCCAGCTCCGTCAAATCCCTCAGCAAATGATGGTTGACCACTT 2802536 Query 22464 GAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATT 22523 | |||||||| || | ||||| | | ||||| || | ||| | || ||||| |||| Sbjct 2802535 GGAACTCGCCAGAGAGTACGCGTCTTGTATAAATATTTGTTGTATAGGGCTCGAAGGATT 2802476 Query 22524 CATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGT 22583 | || || |||| || ||||| ||||| || || |||||||| |||| || || |||| Sbjct 2802475 CGTTATTACCCATAATTTGAGCAGTCGATGCTGTGGGCATCGGAGCCACCAAAAGGGAGT 2802416 Query 22584 TTCTCAAGCCGTGCTTTGAAATTTTACTC-TTGAGCATCGACCAGTCCCACAGATCGGAC 22642 |||| | || || ||| || |||| || || ||||||||| ||||| | | Sbjct 2802415 TTCTAACTCCATGTTTTTTGATGG-ACTCCTTCAGACCTTTCCAGTCCCAAAGATCTGTC 2802357 Query 22643 GGCGTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCG 22702 ||||| || |||||||| ||||| |||| | || ||| |||| || ||||| Sbjct 2802356 GGCGTT---TTATCCCACATGTCGTACTGCAGAATTCCCTTACTGACCGGACTTCCTTCA 2802300 Query 22703 TACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAA 22762 || ||||| || | || | | ||| |||||||| || || |||| || || | Sbjct 2802299 TAAGTTTCATAGGTGCCGTCCCTTTGGGCCAGTTCGCAACTGGCTTCCAGGGCTCCAAAG 2802240 Query 22763 TATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATA 22822 || || || || ||||| | | ||| || | ||| | |||||||||| || | Sbjct 2802239 TAAATGGTTTCAAAGATCTGTTGGTTTAAGAGGCTGGCCTCCTCGCTTTCGTAGGGATAA 2802180 Query 22823 CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTC 22882 ||||| | | | |||||| |||| |||||||||||| || || || || || | | Sbjct 2802179 CGCATAAGAATCAGCGCGTCAGCCAGACCCTGAACGCCGATGCCAATAGGACGATGCCTT 2802120 Query 22883 AGATTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAG 22942 | ||| ||| || ||||| |||| || || | || ||| ||| | | || | | Sbjct 2802119 AAATTGGACTTCTTGGCCTCCGGCAGTGGGTAAAAGTTTATATCTATTATCTTATTGAGG 2802060 Query 22943 TTTCTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGT 23002 ||||||| ||| | || || | | ||||| || | | | Sbjct 2802059 TTTCTGGCCACCGTCTTTGTGACCTCCTTAAGCTTTTTGAAGTCATATGTTTTCTCTGGC 2802000 Query 23003 ACAACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGAC 23062 |||||| |||||| |||||||| || | |||||| || || | |||||| || Sbjct 2801999 GTCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAA 2801940 Query 23063 GTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGG 23122 | |||||| |||||||| || || ||||| || || || || ||||||| || ||| Sbjct 2801939 GAGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGG 2801880 Query 23123 TTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGC 23182 ||||| ||||| ||||||| |||||| |||||||||| || |||| ||||| || ||| Sbjct 2801879 TTGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTCCACTTGC 2801820 Query 23183 GACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCT 23242 ||||| ||||| || ||||| | ||| || | ||| ||| || || | | Sbjct 2801819 GACTCAATGATGGCGAACCACAAGGACTGTGCTTTTACAGTTCG---GTTTGCGCGTCCC 2801763 Query 23243 TCC---TCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCC 23298 ||| ||||| || || | | ||||| || | || | ||| || || || Sbjct 2801762 TCCTGTTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACA-TCATGAAGTCC 2801704 Query 23299 GGGCGATTGCATCGGACACATGAG-----ACTCCACATTGAGTCATTTTCAACGCGTCTC 23353 || ||| ||||| | || | ||| ||||| | | || || ||| || Sbjct 2801703 AGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTG-GCC----TCCACTCGTTTC 2801649 Query 23354 ATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTG 23413 || || ||||| |||||||| || || ||||||| || ||||| || ||| || ||| Sbjct 2801648 ATGAAGAGATCTGGTATCCACAGGGCATAGAACAAATCACGGGCTCGATGCTCTTCCTTG 2801589 Query 23414 CCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAA 23473 || || ||||| || | |||| ||| || || || |||| |||||| ||||| || ||| Sbjct 2801588 CCAGTATTCTTCTTAAGGTCCAGAAACTCAAAAACATCCGAATGCCAGGGCTCTAGATAA 2801529 Query 23474 ACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTG 23533 | |||||| || ||||| | ||| || |||||||| || || || ||| |||||| Sbjct 2801528 ATGGCAAAGGCTCCCGGCCGCTTGCCACCACCCTGATCCACATATCGTGCCACGTTGTTA 2801469 Query 23534 TACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGA- 23592 | ||||| ||||| || || ||||| ||||| | |||| | |||| | | || Sbjct 2801468 AAGACTCTCAGCATAGGAACCAGACCATTGGAAGTGCCG-TTGGTTCCGC--AAATGGAA 2801412 Query 23593 --ACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATC 23650 ||| ||||| |||| || || | | ||| || || || | || || || ||| Sbjct 2801411 GTACCCTTTGCACGAATACAATGGACATTAAGACCAATACCACCTGCAGACTTGGAGATC 2801352 Query 23651 ATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTC----CTCTTTGGTCGC 23706 || |||||||| | | | | | |||| ||||| || ||| || ||||| Sbjct 2801351 ATGGCGCATTGCTCAACTGACTTGAAGATACCCTCAATCGAGTCGGAAGTC-ATGGTC-- 2801295 Query 23707 GACCAAGAAACACGAAGACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCG 23762 | | ||||| || || | || || |||| | | |||||| || || || | Sbjct 2801294 -AGGAGAAAACAAGACGATAGCTGGGGACGATTTGTG-GCAGCGGC---AAATAGCGTTG 2801240 Query 23763 GGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAA 23822 | |||||||| || || | | ||| | | |||||||| || | ||| ||||| | Sbjct 2801239 GCGAAGCGTGCGTGAAATAACGCTCCGAAAGCAAGTTGTACGTCTCCACGGCAGCATCGA 2801180 Query 23823 TGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCG 23882 |||| ||||| || || ||||| || |||||||| | ||||| || |||| |||| | Sbjct 2801179 TGTCTTCTCCATGGATTCCGATTGCCACGCGCATAAGCATGTGCTGGGGTCGCTCGGCGA 2801120 Query 23883 TGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCAT 23942 | || || ||||| | || || ||||| | || || || |||||||| |||| | Sbjct 2801119 TTTTACCATTGATTTTAAGGAGGTACGAACGCTCCAGAGTCTTGAATCCAAAGTAGTTGT 2801060 Query 23943 AGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAAACGGTACGCATT 23991 | |||||||||||| | | ||| | ||| |||| || | ||||| Sbjct 2801059 AACCAAAGTCACGATCATAAATTATAGACGAGTTCAGGCGATCGGCATT 2801011 Score = 105 bits (116), Expect = 6e-18 Identities = 122/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 |||||| ||||| || ||||| ||||| || || ||||| || ||||| | || || | Sbjct 2718504 AATCAAG-ATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCG 2718446 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 ||||||| || | |||||| |||||| | || |||||| ||||| | || | Sbjct 2718445 AACCGTCGGATACCATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTC 2718386 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGA 31347 | || ||||||||||| || ||||||||||| ||| ||||||| Sbjct 2718385 CAGATCAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGA 2718343 >seq5008 Length=644625 Score = 109 bits (120), Expect = 5e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| ||||| ||||| ||||| || |||||| |||| || || || Sbjct 342531 AAAATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTCGAGGTCGAGCCC 342590 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||| | |||| | ||||| | || ||||||||| || | || || || Sbjct 342591 TCCGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCCCCAGAT 342650 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||||| || ||||| ||||| ||| |||| ||| || || ||| || Sbjct 342651 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTAC 342710 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || |||| || Sbjct 342711 AACATCCAGAAGGAGTCCACCCTCCACTTGGTGCT 342745 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || |||||| | || || || || || Sbjct 342761 CATGCAGATCTTCGTCAAGACCCTGACTGGCAAGACCATCACCCTGGAGGTCGAGCCCTC 342820 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||| | |||| | ||||| | || ||||||||| ||| | || || || || Sbjct 342821 CGATACCATCGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCA 342880 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || ||||| ||||| ||| |||| ||| || || ||| || || Sbjct 342881 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAA 342940 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || ||| | ||| |||| | | ||| | ||||| Sbjct 342941 CATCCAGAAGGAGTCCACTTTGCATTTGGTGTTGCGTCTGCGCGGCGG 342988 >seq5076 Length=596799 Score = 100 bits (110), Expect = 3e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || || || ||||| || |||||| |||| ||||| || || Sbjct 35089 CATGCAAATCTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTCGAGGTTGAGCCTTC 35148 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || || | || |||||| ||||| | || ||||| || Sbjct 35149 GGACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAAGAAGGTATCCCCCCCGATCA 35208 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||| ||| |||| || || | || || || Sbjct 35209 GCAGCGTCTGATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTTCGGACTACAA 35268 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||| || || || ||||| || |||||||| || | ||| | || |||| Sbjct 35269 CATCCAGAAGGAGTCGACCCTGCATCTGGTGCTCCGTCTGCGCGGTGGTA 35318 >seq5215 Length=2160492 Score = 82.4 bits (90), Expect = 7e-11 Identities = 150/220 (68%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 31185 AATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTG 31244 |||| || ||||| || || || || || |||| || ||||| |||||| | || || | Sbjct 1797743 AATCCAAAATGCAGATCTTTGTGAAAACCTTGACTGGAAAAACCATCACCTTGGAGGTGG 1797684 Query 31245 AACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGC 31304 | || ||||| | |||| | |||||| | || |||||||| ||| | || | Sbjct 1797683 AGCCCTCCGATACCATCGAGAACGTCAAAGCCAAGATCCAAGACAAGGAGGGCATCCCCC 1797624 Query 31305 CCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCG 31364 | |||||||||||| | || ||||| || || ||| | || || || | || Sbjct 1797623 CAGACCAGCAGCGTTTGATCTTCGCCGGAAAGCAGCTCGAGGATGGCCGCACCCTCTCCG 1797564 Query 31365 ATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 | || ||||| || || || ||||| ||||| |||| || Sbjct 1797563 ACTACAACATCCAGAAGGAGTCGACCCTTCACTTGGTCCT 1797524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445735753560000