Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20bipectinata_20[refseq_20GCF_5F000236285.1_202013-03-04] 5,500 sequences; 167,263,958 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5403 152 1e-31 seq5200 127 4e-24 seq5218 95.1 2e-14 >seq5403 Length=2915140 Score = 152 bits (168), Expect = 1e-31 Identities = 298/438 (68%), Gaps = 3/438 (1%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || |||||||| || || ||||||||||| || ||| ||||| ||||| |||||| | Sbjct 121908 GCTTTTGCTGCCGTAGAGGGAATCTTCTTCAGCGGTAGCTTCGCCTCCATCTTCTGGCTG 121967 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| | ||| | |||||||||| |||| |||||| ||| | || || ||||||||| Sbjct 121968 AAGAAGCGAGGTCTGATGCCTGGTCTGACCTTCTCCAACGAGCTGATCTCCAGGGACGAA 122027 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 || ||||| |||||||||| || |||| || || | | || | | ||| Sbjct 122028 GGCCTTCACTGCGACTTTGC-TG--TGCTAATGTTCCAGCATCTCGTCCAGAAGCCACGT 122084 Query 102101 AGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACA 102160 | || | || | || || || || || || |||||||| || || |||||| Sbjct 122085 CGGGAGCGCATCATCGAGATCATCCGCGACGCTGTGGACATTGAACAGGAGTTCCTCACA 122144 Query 102161 GTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAA 102220 | || |||| || || || | || ||||||||| | |||||| || ||||| ||| Sbjct 122145 GACGCCTTGCCCGTGAATTTGATCGGCATGAACTGCGACTTGATGTCACAATACATCGAA 122204 Query 102221 TTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTACCAAC 102280 || || || || ||| |||| || |||| | | || ||| || | || Sbjct 122205 TTCGTTGCGGACCGGCTACTGGTAGAGCTGGGCGTCGGGAAAATCTACAACACCAAGAAT 122264 Query 102281 CCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAGA 102340 || ||| |||||||| | || || || || ||||||||||| |||||||||| Sbjct 122265 CCTTTCAATTTCATGGAGATGATCTCGCTGGACGGGAAGACCAACTTCTTTGAAAAGAAG 122324 Query 102341 GTCGCCGAGTATCAACGT 102358 || | ||||| || ||| Sbjct 122325 GTGGGAGAGTACCAGCGT 122342 >seq5200 Length=2197361 Score = 127 bits (140), Expect = 4e-24 Identities = 237/340 (70%), Gaps = 16/340 (5%) Strand=Plus/Plus Query 35396 GGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACC 35455 || || ||||| || |||||||| ||||||||||| || ||||||||||||||| |||| Sbjct 1469013 GGTGACTTGGGCCCGGTATACGGTTTCCAATGGCGGCACTTTGGTGCTGAATATACTACC 1469072 Query 35456 TGTTCTTCCGATTA-TACTG--GAAAGGGTATTGATCAATTGGCCAATATACTAAAGACC 35512 ||| |||| | ||| | | ||||| || |||||| || | | | | || Sbjct 1469073 TGTGA---CGATGACTACCGCGGCAAGGGCATCGATCAACTGAAGCAGGTTATTGACACG 1469129 Query 35513 CTGAGAGAA-AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCT 35571 | | |||| ||||| ||| || | || || ||| |||| |||||||| |||| | Sbjct 1469130 ATCA-AGAACAATCCTTCGGATCGACGTATCATCATGTCGGCGTGGAATCCGCTGGACAT 1469188 Query 35572 TCACCTTATGGCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGTGGCTAA----- 35625 || ||||| | || || |||||| || || |||| |||||||| || | Sbjct 1469189 TCCAAAGATGGCATTGCCCCCGTGCCAC-TGCTTGGCTCAGTTTTATGTCTCTCAGGAGC 1469247 Query 35626 -TGGAGAATTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCT 35684 ||| ||| | || |||||| ||||||| ||||| | || | || ||||| ||||||| Sbjct 1469248 GTGGCGAACTCTCCTGCCAGCTGTATCAACGAAGTGCCGACATGGGCTTGGGAGTGCCCT 1469307 Query 35685 TCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGC 35724 |||| ||||| || ||| | || |||| || |||| || Sbjct 1469308 TCAACATTGCCTCCTACGCCCTGTTGACCTATATGATTGC 1469347 >seq5218 Length=3038582 Score = 95.1 bits (104), Expect = 2e-14 Identities = 250/375 (67%), Gaps = 10/375 (3%) Strand=Plus/Minus Query 94166 TCACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCAC 94225 |||||||| |||||| ||||| || ||||||||||| |||||| | || || | | Sbjct 2801998 TCACAAACATGTTGAGAGCGATCGATGCCAAATTGCAAACTGCAATCTCGTCGGGCGAAG 2801939 Query 94226 TGTACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGT 94285 ||||| ||||||||| ||||||| ||| | || ||| |||| || || | ||||| Sbjct 2801938 AGTACTCGACAATTTCCGTGCACAGATTACTGCATTTAATGGTGCCCACGTTCTGTTGGT 2801879 Query 94286 TAGACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTCGATACGTG 94345 | ||||| ||| | ||||| ||| || ||||| | ||||| || || || Sbjct 2801878 TGCTCTTTCGGTTGCACGCGTCCTTGAAGAGCATGTAAGGATTGCCAGTCTC--CACTTG 2801821 Query 94346 CAGAATTAATTTGGTCGA---ATAATGCACGTGCCTTCACCACCTC--TTTACCTTTGCC 94400 | || | ||| | ||| | || | |||| || | || || ||| | | || Sbjct 2801820 C-GACTCAATGATGGCGAACCACAAGGACTGTGCTTTTA-CAGTTCGGTTTGCGCGTCCC 2801763 Query 94401 TTCAGCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCC 94460 | | | || |||||| | || | | | |||||| ||||| || || ||| || Sbjct 2801762 TCCTG-TTCGTATTTCACATATAGCTTTTCAAACTCATCGCCCCACACATCATGAAGTCC 2801704 Query 94461 AGGGCACTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTCACTCTCTCCATGAA 94520 |||||| | |||||| || | || ||||| | || |||| ||||| | |||||| Sbjct 2801703 AGGGCATTTGTGGGGACAGAAAAGCGACCAGTCCTCATTGGCCTCCACTCGTTTCATGAA 2801644 Query 94521 GAGATCAGATACCCA 94535 |||||| | || ||| Sbjct 2801643 GAGATCTGGTATCCA 2801629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989514265252500